NP-MRD: Showing NP-Card for (1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate (NP0221813)

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Record Information

Version

2.0

Created at

2022-09-05 23:29:22 UTC

Updated at

2022-09-05 23:29:22 UTC

NP-MRD ID

NP0221813

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate

Description

Aquariolide B belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. (1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate is found in Erythropodium caribaeorum. Based on a literature review very few articles have been published on Aquariolide B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062201292D          

 35 38  0  0  1  0            999 V2000
    3.2032   -2.5913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1928   -1.7663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4141   -1.4940    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    2.1837   -2.9042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6614   -3.5428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9979   -3.0372    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9926   -0.7847    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309062201292D          

 35 38  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0221813

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@]1(C)[C@@H]2[C@H](OC(C)=O)[C@]3(O)[C@@H](C)C(=O)O[C@H]3[C@@H](Cl)C(=C)[C@@H](OC(C)=O)[C@H]3C=C[C@@H](C1=O)[C@@]23C

> <INCHI_IDENTIFIER>
InChI=1S/C25H31ClO9/c1-10-16(26)20-25(31,11(2)22(30)35-20)21(34-13(4)28)18-23(5)14(17(10)33-12(3)27)8-9-15(23)19(29)24(18,6)32-7/h8-9,11,14-18,20-21,31H,1H2,2-7H3/t11-,14+,15-,16-,17+,18+,20-,21-,23-,24-,25-/m0/s1

> <INCHI_KEY>
CQNFVFYPBRSZQC-HWOPWSNWSA-N

> <FORMULA>
C25H31ClO9

> <MOLECULAR_WEIGHT>
510.96

> <EXACT_MASS>
510.1656603

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
50.591692916151445

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,3R,4R,7R,8S,10S,11S,14R,16S,17R)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0^{3,7}.0^{14,17}]heptadec-12-en-10-yl acetate

> <JCHEM_LOGP>
1.4195819743333344

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.16138502146822

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.35988727412741

> <JCHEM_PKA_STRONGEST_BASIC>
-3.950176895012805

> <JCHEM_POLAR_SURFACE_AREA>
125.43000000000002

> <JCHEM_REFRACTIVITY>
122.11439999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,3R,4R,7R,8S,10S,11S,14R,16S,17R)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0^{3,7}.0^{14,17}]heptadec-12-en-10-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       5.979  -4.837   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.960  -3.297   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.506  -2.789   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.531  -3.981   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       4.076  -5.421   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.101  -6.613   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       5.596  -5.669   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       3.720  -1.465   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.079  -1.571   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.484  -0.150   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.652   0.855   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.005   2.353   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.001   3.521   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.540   2.480   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.015   2.923   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.254   3.993   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.421   4.998   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.135   1.060   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.675   1.079   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.183   2.533   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.696   2.819   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.205   4.273   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.701   1.652   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.867   0.104   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       8.009   1.638   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       9.217   0.844   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      10.568   1.584   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.339  -0.211   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      11.852   0.075   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       9.681  -1.604   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       8.153  -1.409   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       7.400  -2.752   0.000  0.00  0.00           C+0
HETATM   33 Cl   UNK     0       8.405  -3.919   0.000  0.00  0.00          Cl+0
HETATM   34  C   UNK     0       3.968   0.055   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.311  -0.698   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5                                                            
CONECT    8    3    9   34                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   34                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16   18                                             
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16                                                            
CONECT   18   14   19   34                                                  
CONECT   19   18   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   19   25   26   31                                             
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   24   32                                                  
CONECT   32   31    2   33                                                  
CONECT   33   32                                                            
CONECT   34   18    8   11   35                                             
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₁ClO₉

Average Mass

510.9600 Da

Monoisotopic Mass

510.16566 Da

IUPAC Name

(1S,2S,3R,4R,7R,8S,10S,11S,14R,16S,17R)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0^{3,7}.0^{14,17}]heptadec-12-en-10-yl acetate

Traditional Name

(1S,2S,3R,4R,7R,8S,10S,11S,14R,16S,17R)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0^{3,7}.0^{14,17}]heptadec-12-en-10-yl acetate

CAS Registry Number

Not Available

SMILES

CO[C@@]1(C)[C@@H]2[C@H](OC(C)=O)[C@]3(O)[C@@H](C)C(=O)O[C@H]3[C@@H](Cl)C(=C)[C@@H](OC(C)=O)[C@H]3C=C[C@@H](C1=O)[C@@]23C

InChI Identifier

InChI=1S/C25H31ClO9/c1-10-16(26)20-25(31,11(2)22(30)35-20)21(34-13(4)28)18-23(5)14(17(10)33-12(3)27)8-9-15(23)19(29)24(18,6)32-7/h8-9,11,14-18,20-21,31H,1H2,2-7H3/t11-,14+,15-,16-,17+,18+,20-,21-,23-,24-,25-/m0/s1

InChI Key

CQNFVFYPBRSZQC-HWOPWSNWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Erythropodium caribaeorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Gamma butyrolactone
Cyclic alcohol
Tertiary alcohol
Tetrahydrofuran
Carboxylic acid ester
Ketone
Lactone
Ether
Dialkyl ether
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Organochloride
Organohalogen compound
Alkyl chloride
Organic oxide
Organic oxygen compound
Alcohol
Carbonyl group
Alkyl halide
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.42	ChemAxon
pKa (Strongest Acidic)	12.36	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	125.43 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	122.11 m³·mol⁻¹	ChemAxon
Polarizability	50.59 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9202810

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11027630

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate (NP0221813)

MOL for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

3D MOL for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

3D SDF for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

3D-SDF for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

PDB for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

3D PDB for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

SMILES for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

INCHI for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

Structure for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)

3D Structure for NP0221813 ((1s,2s,3r,4r,7r,8s,10s,11s,14r,16s,17r)-2-(acetyloxy)-8-chloro-3-hydroxy-16-methoxy-4,16,17-trimethyl-9-methylidene-5,15-dioxo-6-oxatetracyclo[9.5.1.0³,⁷.0¹⁴,¹⁷]heptadec-12-en-10-yl acetate)