NP-MRD: Showing NP-Card for 3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol (NP0221801)

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Record Information

Version

2.0

Created at

2022-09-05 23:27:54 UTC

Updated at

2022-09-05 23:27:54 UTC

NP-MRD ID

NP0221801

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol

Description

4,4-Dimethyl-2-(3,3,3-trichloro-2-methylpropyl)-3,4-dihydro-2H-pyrrole-3,5-diol belongs to the class of organic compounds known as pyrrolidine-2-ones. These are pyrrolidines which bear a C=O group at position 2 of the pyrrolidine ring. 3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol is found in Lamellodysidea herbacea. 4,4-Dimethyl-2-(3,3,3-trichloro-2-methylpropyl)-3,4-dihydro-2H-pyrrole-3,5-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 32  0  0  0  0  0  0  0  0999 V2000
    2.9356   -0.6949    1.0154 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4805   -0.1283   -0.2829 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1873    0.6286   -0.2168 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0236   -0.1727    0.2497 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2281   -1.3027   -0.6227 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5354   -1.2225   -1.1809 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9111   -1.8618   -2.2000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2923   -0.2826   -0.3456 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3810    0.4283   -1.0916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8130   -1.0131    0.8728 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2228    0.7043    0.0871 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0376    1.6512   -0.9175 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5427    0.8870   -0.7312 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1194    0.1096   -0.9336 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    3.5900    2.1248    0.5714 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.9677    1.6728   -2.1957 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.5469   -0.1585    1.9064 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7080   -1.7978    1.0864 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0455   -0.6345    1.0822 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.9264   -1.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2725    1.5635    0.3723 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9629    0.9642   -1.2657 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0576   -0.4545    1.3085 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4927   -2.0455   -0.7816 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9208    1.0185   -1.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8927    1.1026   -0.3561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0847   -0.3061   -1.5046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2153   -0.3266    1.6384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5279   -1.8007    0.5662 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9398   -1.5277    1.3294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4764    1.2370    1.0105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8994    2.5646   -0.5603 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  8  9  1  0
  8 10  1  0
  8 11  1  0
 11 12  1  0
  2 13  1  0
 13 14  1  0
 13 15  1  0
 13 16  1  0
 11  4  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  6
  3 21  1  0
  3 22  1  0
  4 23  1  1
  5 24  1  0
  9 25  1  0
  9 26  1  0
  9 27  1  0
 10 28  1  0
 10 29  1  0
 10 30  1  0
 11 31  1  1
 12 32  1  0
M  END


  Mrv1533004151514252D          

 16 16  0  0  0  0            999 V2000
    0.3091   -1.6626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1296   -1.5764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0157    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1198    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0198    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6145   -2.2438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0995   -2.9112    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    0.9471   -2.7287    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.2820   -1.7589    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
  8 11  1  0  0  0  0
  4 11  1  0  0  0  0
 11 12  1  0  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 13 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0221801

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CC1NC(=O)C(C)(C)C1O)C(Cl)(Cl)Cl

> <INCHI_IDENTIFIER>
InChI=1S/C10H16Cl3NO2/c1-5(10(11,12)13)4-6-7(15)9(2,3)8(16)14-6/h5-7,15H,4H2,1-3H3,(H,14,16)

> <INCHI_KEY>
WXVMITZTZFBSBV-UHFFFAOYSA-N

> <FORMULA>
C10H16Cl3NO2

> <MOLECULAR_WEIGHT>
288.59

> <EXACT_MASS>
287.0246619

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
27.222868119177477

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-hydroxy-3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)pyrrolidin-2-one

> <ALOGPS_LOGP>
2.61

> <JCHEM_LOGP>
2.168434423333334

> <ALOGPS_LOGS>
-2.68

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.101009379893245

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.144201661778144

> <JCHEM_PKA_STRONGEST_BASIC>
-1.543786555157689

> <JCHEM_POLAR_SURFACE_AREA>
49.33

> <JCHEM_REFRACTIVITY>
65.9956

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.07e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
4-hydroxy-3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)pyrrolidin-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 15-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   15-APR-15         0                                  
HETATM    1  C   UNK     0       0.577  -3.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.109  -2.943   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.735  -1.536   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       0.290  -0.290   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.651   1.651   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.029   3.224   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.090   3.224   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       3.770   1.651   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       3.014  -4.188   0.000  0.00  0.00           C+0
HETATM   14 Cl   UNK     0       3.919  -5.434   0.000  0.00  0.00          Cl+0
HETATM   15 Cl   UNK     0       1.768  -5.094   0.000  0.00  0.00          Cl+0
HETATM   16 Cl   UNK     0       4.260  -3.283   0.000  0.00  0.00          Cl+0
CONECT    1    2                                                            
CONECT    2    1    3   13                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   11                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8    4   12                                                  
CONECT   12   11                                                            
CONECT   13    2   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₆Cl₃NO₂

Average Mass

288.5900 Da

Monoisotopic Mass

287.02466 Da

IUPAC Name

4-hydroxy-3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)pyrrolidin-2-one

Traditional Name

4-hydroxy-3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)pyrrolidin-2-one

CAS Registry Number

Not Available

SMILES

CC(CC1NC(=O)C(C)(C)C1O)C(Cl)(Cl)Cl

InChI Identifier

InChI=1S/C10H16Cl3NO2/c1-5(10(11,12)13)4-6-7(15)9(2,3)8(16)14-6/h5-7,15H,4H2,1-3H3,(H,14,16)

InChI Key

WXVMITZTZFBSBV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lamellodysidea herbacea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pyrrolidine-2-ones. These are pyrrolidines which bear a C=O group at position 2 of the pyrrolidine ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyrrolidines

Sub Class

Pyrrolidones

Direct Parent

Pyrrolidine-2-ones

Alternative Parents

Substituents

2-pyrrolidone
Carboxamide group
Lactam
Secondary alcohol
Secondary carboxylic acid amide
Carboxylic acid derivative
Azacycle
Organic oxide
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organochloride
Organohalogen compound
Organic oxygen compound
Alcohol
Organic nitrogen compound
Carbonyl group
Alkyl halide
Alkyl chloride
Hydrocarbon derivative
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.61	ALOGPS
logP	2.17	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	12.14	ChemAxon
pKa (Strongest Basic)	-1.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.33 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	66 m³·mol⁻¹	ChemAxon
Polarizability	27.22 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14825940

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol (NP0221801)

MOL for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

3D MOL for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

3D SDF for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

3D-SDF for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

PDB for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

3D PDB for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

SMILES for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

INCHI for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

Structure for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)

3D Structure for NP0221801 (3,3-dimethyl-5-(3,3,3-trichloro-2-methylpropyl)-4,5-dihydropyrrole-2,4-diol)