NP-MRD: Showing NP-Card for 5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one (NP0221646)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 23:16:44 UTC

Updated at

2022-09-05 23:16:44 UTC

NP-MRD ID

NP0221646

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one

Description

5-[(1S,2R,5S,10R,11S,14S,15S,16S)-11,16-dihydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-6-en-14-yl]-2H-pyran-2-one belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative. 5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one is found in Drimia maritima. Based on a literature review very few articles have been published on 5-[(1S,2R,5S,10R,11S,14S,15S,16S)-11,16-dihydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadec-6-en-14-yl]-2H-pyran-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062201162D          

 40 45  0  0  1  0            999 V2000
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1444   -3.9229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5171   -2.2259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9853   -1.5952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2655   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777   -0.6740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6095   -1.3047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4216   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9534   -1.7902    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.7655   -1.6450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2974   -2.2757    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.1095   -2.1305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6413   -2.7612    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.4534   -2.6160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9852   -3.2467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3610   -3.5371    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.8928   -4.1678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5489   -3.6824    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.2686   -4.4583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0171   -3.0516    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.2049   -3.1969    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6731   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8610   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3292   -2.0807    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0489   -2.8566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1731   -1.7404    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3708   -0.9394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5218   -1.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8390   -1.6970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0683   -2.4895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5619   -3.1408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8728   -3.9050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3665   -4.5563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5492   -4.4435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0429   -5.0948    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383   -3.6793    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7447   -3.0280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  1  1  0  0  0
 12 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 10 27  1  0  0  0  0
  6 27  1  0  0  0  0
 27 28  1  1  0  0  0
  7 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
 39 40  1  0  0  0  0
 34 40  2  0  0  0  0
M  END

     RDKit          3D

 82 87  0  0  0  0  0  0  0  0999 V2000
    4.0203    1.3847   -0.1429 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5398   -0.0027   -0.4999 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3471    0.0891   -1.3790 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6920   -0.0986   -2.7456 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2267   -0.8542   -1.1284 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7879   -1.0289    0.2787 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7692   -0.4011    1.2088 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4828   -0.7071    2.6457 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1189   -0.0895    2.9515 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9141   -0.5055    1.9381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0994   -0.8303    2.4206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2031   -1.2588    1.5222 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8757   -0.2361    0.9096 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2304   -0.1890    1.1228 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.9896   -0.3667   -0.0190 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8787    0.6322   -0.9530 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1727    0.0724   -2.1857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9225   -0.9763   -2.7050 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2169    1.8752   -0.4311 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4837    2.9621   -1.2695 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8590    2.1768    0.9066 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.3778    3.3421    1.4982 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6571    1.0605    1.8869 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.8434    0.7643    2.5964 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5831   -2.1612    0.4799 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5264   -1.4324   -0.2978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6358   -0.5375    0.5105 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8074    0.8718   -0.0249 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1695   -0.6878    0.8154 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9937   -0.2297    1.8552 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5063   -2.1389    0.6004 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8651   -1.9786   -0.1285 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6508   -0.8608   -1.1034 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.8621   -0.1350   -1.4365 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0208    0.4600   -2.6861 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1547    1.1663   -2.9942 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1588    1.2902   -2.0486 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2068    1.9495   -2.3486 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9932    0.7283   -0.8889 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9028    0.0371   -0.5638 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0756    1.4254    0.1888 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4355    1.8076    0.7226 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8255    2.0754   -0.9991 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9764    1.1533   -1.3626 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9001    0.2332   -3.2533 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3924   -1.8025   -1.6879 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3333   -0.4025   -1.6761 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7324   -2.1297    0.5321 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6471    0.7239    1.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4911   -1.7693    2.9015 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2034   -0.1144    3.2825 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2718    1.0241    2.8677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1873   -0.3462    3.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3127   -0.7975    3.4985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9206   -1.8858    2.1009 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5059   -1.0551    1.7906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9206    0.9282   -1.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2027    0.8897   -2.9345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1747   -0.3003   -1.9553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2475   -1.5028   -1.9462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1115    1.7884   -0.3725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4393    3.0204   -1.4740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9393    2.3676    0.6754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2775    4.0473    0.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8512    1.3144    2.5997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2839    1.6505    2.7471 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3720   -2.4759   -0.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1759   -3.0991    0.9345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9470   -2.2393   -0.8367 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0133   -0.8745   -1.1486 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0394    1.5308    0.1531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6722    1.3200    0.5537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1743    0.8414   -1.0797 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3091   -0.9582    2.4253 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8901   -2.6818   -0.1003 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6405   -2.6485    1.5560 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1664   -2.9365   -0.5722 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5331   -1.6277    0.7003 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1829   -1.3129   -2.0485 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2698    0.3841   -3.4245 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2777    1.6354   -3.9850 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9432   -0.3566    0.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1
  2 33  1  0
 33 32  1  0
 32 31  1  0
 31 29  1  0
 29 30  1  1
 29  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  6
 27  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 16 19  1  0
 19 20  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 33 34  1  0
 34 40  2  0
 40 39  1  0
 39 37  1  0
 37 38  2  0
 37 36  1  0
 36 35  2  0
 29  2  1  0
  6  7  1  0
 23 14  1  0
 35 34  1  0
  3  2  1  0
 27 10  1  0
  1 41  1  0
  1 42  1  0
  1 43  1  0
 33 79  1  6
 32 77  1  0
 32 78  1  0
 31 75  1  0
 31 76  1  0
 30 74  1  0
  7 49  1  1
  8 50  1  0
  8 51  1  0
  9 52  1  0
  9 53  1  0
 11 54  1  0
 12 55  1  1
 25 67  1  0
 25 68  1  0
 26 69  1  0
 26 70  1  0
 28 71  1  0
 28 72  1  0
 28 73  1  0
  6 48  1  1
  5 46  1  0
  5 47  1  0
  3 44  1  6
  4 45  1  0
 14 56  1  1
 16 57  1  6
 17 58  1  0
 17 59  1  0
 18 60  1  0
 19 61  1  1
 20 62  1  0
 21 63  1  6
 22 64  1  0
 23 65  1  1
 24 66  1  0
 40 82  1  0
 36 81  1  0
 35 80  1  0
M  END


  Mrv1652309062201162D          

 40 45  0  0  1  0            999 V2000
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1444   -3.9229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5171   -2.2259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9853   -1.5952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2655   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777   -0.6740    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6095   -1.3047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4216   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9534   -1.7902    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.7655   -1.6450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2974   -2.2757    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.1095   -2.1305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6413   -2.7612    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   11.4534   -2.6160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9852   -3.2467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3610   -3.5371    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.8928   -4.1678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.5489   -3.6824    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.2686   -4.4583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0171   -3.0516    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.2049   -3.1969    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6731   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8610   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3292   -2.0807    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0489   -2.8566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1731   -1.7404    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3708   -0.9394    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5218   -1.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8390   -1.6970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0683   -2.4895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5619   -3.1408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8728   -3.9050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3665   -4.5563    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5492   -4.4435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0429   -5.0948    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2383   -3.6793    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7447   -3.0280    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  1  1  0  0  0
 12 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 10 27  1  0  0  0  0
  6 27  1  0  0  0  0
 27 28  1  1  0  0  0
  7 29  1  0  0  0  0
  2 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 37 38  2  0  0  0  0
 37 39  1  0  0  0  0
 39 40  1  0  0  0  0
 34 40  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0221646

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12[C@H](CC[C@]1(O)[C@@H]1CCC3=C[C@H](CC[C@]3(C)[C@H]1C[C@@H]2O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C1=COC(=O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C30H42O10/c1-28-9-7-17(39-27-26(36)25(35)24(34)21(13-31)40-27)11-16(28)4-5-19-20(28)12-22(32)29(2)18(8-10-30(19,29)37)15-3-6-23(33)38-14-15/h3,6,11,14,17-22,24-27,31-32,34-37H,4-5,7-10,12-13H2,1-2H3/t17-,18+,19+,20-,21+,22-,24+,25-,26+,27+,28-,29-,30-/m0/s1

> <INCHI_KEY>
XKNRCIXILGHSLP-LWDMKCRBSA-N

> <FORMULA>
C30H42O10

> <MOLECULAR_WEIGHT>
562.656

> <EXACT_MASS>
562.277797552

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
82

> <JCHEM_AVERAGE_POLARIZABILITY>
60.044762272856474

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-[(1S,2R,5S,10R,11S,14S,15S,16S)-11,16-dihydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-en-14-yl]-2H-pyran-2-one

> <JCHEM_LOGP>
0.0254427696666657

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.138703431267736

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.202568473899138

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9765520485033283

> <JCHEM_POLAR_SURFACE_AREA>
166.14

> <JCHEM_REFRACTIVITY>
143.11350000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5-[(1S,2R,5S,10R,11S,14S,15S,16S)-11,16-dihydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-en-14-yl]pyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       7.736  -7.323   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      16.362  -3.071   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      17.355  -4.248   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      18.871  -3.977   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      19.864  -5.154   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.380  -4.883   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      22.372  -6.061   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      19.341  -6.603   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      20.333  -7.780   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      17.825  -6.874   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      17.301  -8.322   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      16.832  -5.696   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      15.316  -5.967   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      11.291  -5.332   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       8.159  -1.754   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.782  -5.863   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.363  -7.289   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       4.417  -8.505   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       2.892  -8.295   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       1.947  -9.510   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0       2.312  -6.868   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0       3.257  -5.652   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   29   33                                             
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8   29                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   27                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   25                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   23                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   16   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   14   24                                                  
CONECT   24   23                                                            
CONECT   25   12   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   10    6   28                                             
CONECT   28   27                                                            
CONECT   29    7    2   30   31                                             
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32    2   34                                                  
CONECT   34   33   35   40                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   40                                                       
CONECT   40   39   34                                                       
MASTER        0    0    0    0    0    0    0    0   40    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₂O₁₀

Average Mass

562.6560 Da

Monoisotopic Mass

562.27780 Da

IUPAC Name

Traditional Name

5-[(1S,2R,5S,10R,11S,14S,15S,16S)-11,16-dihydroxy-2,15-dimethyl-5-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-6-en-14-yl]pyran-2-one

CAS Registry Number

Not Available

SMILES

C[C@@]12[C@H](CC[C@]1(O)[C@@H]1CCC3=C[C@H](CC[C@]3(C)[C@H]1C[C@@H]2O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C1=COC(=O)C=C1

InChI Identifier

InChI=1S/C30H42O10/c1-28-9-7-17(39-27-26(36)25(35)24(34)21(13-31)40-27)11-16(28)4-5-19-20(28)12-22(32)29(2)18(8-10-30(19,29)37)15-3-6-23(33)38-14-15/h3,6,11,14,17-22,24-27,31-32,34-37H,4-5,7-10,12-13H2,1-2H3/t17-,18+,19+,20-,21+,22-,24+,25-,26+,27+,28-,29-,30-/m0/s1

InChI Key

XKNRCIXILGHSLP-LWDMKCRBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Drimia maritima	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bufanolides and derivatives. These are steroid lactones containing a pyran-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid lactones

Direct Parent

Bufanolides and derivatives

Alternative Parents

Substituents

Bufanolide-skeleton
Steroidal glycoside
12-hydroxysteroid
14-hydroxysteroid
Hydroxysteroid
Delta-4-steroid
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Pyranone
Pyran
Oxane
Monosaccharide
Tertiary alcohol
Cyclic alcohol
Heteroaromatic compound
Secondary alcohol
Lactone
Organoheterocyclic compound
Polyol
Acetal
Oxacycle
Alcohol
Organic oxide
Primary alcohol
Hydrocarbon derivative
Organooxygen compound
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.025	ChemAxon
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	166.14 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	143.11 m³·mol⁻¹	ChemAxon
Polarizability	60.04 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162991352

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one (NP0221646)

MOL for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

3D MOL for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

3D SDF for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

3D-SDF for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

PDB for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

3D PDB for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

SMILES for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

INCHI for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

Structure for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)

3D Structure for NP0221646 (5-[(1r,3as,3br,7s,9ar,9bs,11s,11as)-3a,11-dihydroxy-9a,11a-dimethyl-7-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1h,2h,3h,3bh,4h,5h,7h,8h,9h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]pyran-2-one)