| Record Information |
|---|
| Version | 2.0 |
|---|
| Created at | 2022-09-05 22:26:10 UTC |
|---|
| Updated at | 2022-09-05 22:26:11 UTC |
|---|
| NP-MRD ID | NP0220980 |
|---|
| Secondary Accession Numbers | None |
|---|
| Natural Product Identification |
|---|
| Common Name | (2s,3s,3ar,4r,6s,7s,8s,12r,13ar)-3,4-bis(acetyloxy)-12,13a-dihydroxy-2,9,9,12-tetramethyl-6,7-bis({[(2z)-2-methylbut-2-enoyl]oxy})-5-methylidene-13-oxo-1h,2h,3h,3ah,4h,6h,7h,8h-cyclopenta[12]annulen-8-yl pyridine-3-carboxylate |
|---|
| Description | Amygdaloidin A belongs to the class of organic compounds known as jatrophane and cyclojatrophane diterpenoids. These are diterpenoids with a structure based on the jatrophane or the 9,13-jatrophane skeleton. Jatrophane can be derived from casbane by 6,10-cyclization and opening of the cyclopropane. Cyclojatrophane diterpenoids are based on the 9,13-cyclization of the jatrophane skeleton yields the 9,13-cyclojatrophane skeleton. (2s,3s,3ar,4r,6s,7s,8s,12r,13ar)-3,4-bis(acetyloxy)-12,13a-dihydroxy-2,9,9,12-tetramethyl-6,7-bis({[(2z)-2-methylbut-2-enoyl]oxy})-5-methylidene-13-oxo-1h,2h,3h,3ah,4h,6h,7h,8h-cyclopenta[12]annulen-8-yl pyridine-3-carboxylate is found in Euphorbia amygdaloides. Based on a literature review very few articles have been published on Amygdaloidin A. |
|---|
| Structure | C\C=C(\C)C(=O)O[C@@H]1[C@@H](OC(=O)C(\C)=C/C)C(=C)[C@H](OC(C)=O)[C@H]2[C@@H](OC(C)=O)[C@@H](C)C[C@]2(O)C(=O)[C@](C)(O)\C=C/C(C)(C)[C@@H]1OC(=O)C1=CC=CN=C1 InChI=1S/C40H51NO13/c1-12-21(3)34(44)52-31-24(6)30(51-26(8)43)28-29(50-25(7)42)23(5)19-40(28,49)37(47)39(11,48)17-16-38(9,10)33(32(31)53-35(45)22(4)13-2)54-36(46)27-15-14-18-41-20-27/h12-18,20,23,28-33,48-49H,6,19H2,1-5,7-11H3/b17-16-,21-12-,22-13-/t23-,28+,29-,30-,31-,32+,33+,39+,40+/m0/s1 |
|---|
| Synonyms | Not Available |
|---|
| Chemical Formula | C40H51NO13 |
|---|
| Average Mass | 753.8420 Da |
|---|
| Monoisotopic Mass | 753.33604 Da |
|---|
| IUPAC Name | (2S,3S,3aR,4R,6S,7S,8S,12R,13aR)-3,4-bis(acetyloxy)-12,13a-dihydroxy-2,9,9,12-tetramethyl-6,7-bis({[(2Z)-2-methylbut-2-enoyl]oxy})-5-methylidene-13-oxo-1H,2H,3H,3aH,4H,5H,6H,7H,8H,9H,12H,13H,13aH-cyclopenta[12]annulen-8-yl pyridine-3-carboxylate |
|---|
| Traditional Name | (2S,3S,3aR,4R,6S,7S,8S,12R,13aR)-3,4-bis(acetyloxy)-12,13a-dihydroxy-2,9,9,12-tetramethyl-6,7-bis({[(2Z)-2-methylbut-2-enoyl]oxy})-5-methylidene-13-oxo-1H,2H,3H,3aH,4H,6H,7H,8H-cyclopenta[12]annulen-8-yl pyridine-3-carboxylate |
|---|
| CAS Registry Number | Not Available |
|---|
| SMILES | C\C=C(\C)C(=O)O[C@@H]1[C@@H](OC(=O)C(\C)=C/C)C(=C)[C@H](OC(C)=O)[C@H]2[C@@H](OC(C)=O)[C@@H](C)C[C@]2(O)C(=O)[C@](C)(O)\C=C/C(C)(C)[C@@H]1OC(=O)C1=CC=CN=C1 |
|---|
| InChI Identifier | InChI=1S/C40H51NO13/c1-12-21(3)34(44)52-31-24(6)30(51-26(8)43)28-29(50-25(7)42)23(5)19-40(28,49)37(47)39(11,48)17-16-38(9,10)33(32(31)53-35(45)22(4)13-2)54-36(46)27-15-14-18-41-20-27/h12-18,20,23,28-33,48-49H,6,19H2,1-5,7-11H3/b17-16-,21-12-,22-13-/t23-,28+,29-,30-,31-,32+,33+,39+,40+/m0/s1 |
|---|
| InChI Key | NJSSYEQVBPQYFC-NWPARGMZSA-N |
|---|
| Experimental Spectra |
|---|
|
| Not Available | | Predicted Spectra |
|---|
|
| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
|---|
| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
|---|
|
| Not Available | | Species |
|---|
| Species of Origin | |
|---|
| Chemical Taxonomy |
|---|
| Description | Belongs to the class of organic compounds known as jatrophane and cyclojatrophane diterpenoids. These are diterpenoids with a structure based on the jatrophane or the 9,13-jatrophane skeleton. Jatrophane can be derived from casbane by 6,10-cyclization and opening of the cyclopropane. Cyclojatrophane diterpenoids are based on the 9,13-cyclization of the jatrophane skeleton yields the 9,13-cyclojatrophane skeleton. |
|---|
| Kingdom | Organic compounds |
|---|
| Super Class | Lipids and lipid-like molecules |
|---|
| Class | Prenol lipids |
|---|
| Sub Class | Diterpenoids |
|---|
| Direct Parent | Jatrophane and cyclojatrophane diterpenoids |
|---|
| Alternative Parents | |
|---|
| Substituents | - Jatrophane diterpenoid
- Pentacarboxylic acid or derivatives
- Pyridine carboxylic acid or derivatives
- Pyridine carboxylic acid
- Fatty acid ester
- Fatty acyl
- Pyridine
- Acyloin
- Heteroaromatic compound
- Alpha,beta-unsaturated carboxylic ester
- Enoate ester
- Tertiary alcohol
- Cyclic alcohol
- Ketone
- Carboxylic acid ester
- Azacycle
- Organoheterocyclic compound
- Carboxylic acid derivative
- Organic nitrogen compound
- Organic oxygen compound
- Organopnictogen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Organonitrogen compound
- Carbonyl group
- Alcohol
- Aromatic heteropolycyclic compound
|
|---|
| Molecular Framework | Aromatic heteropolycyclic compounds |
|---|
| External Descriptors | Not Available |
|---|
| Physical Properties |
|---|
| State | Not Available |
|---|
| Experimental Properties | | Property | Value | Reference |
|---|
| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
|
|---|
| Predicted Properties | |
|---|