NP-MRD: Showing NP-Card for (10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one (NP0220910)

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Record Information

Version

2.0

Created at

2022-09-05 22:21:13 UTC

Updated at

2022-09-05 22:21:13 UTC

NP-MRD ID

NP0220910

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one

Description

Demecolceine belongs to the class of organic compounds known as tropolones. Tropolones are compounds containing tropone ring with a hydroxyl group at ring position 2. (10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one is found in Colchicum ritchii. Based on a literature review very few articles have been published on Demecolceine.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309062200212D          

 26 28  0  0  1  0            999 V2000
    0.1048    2.3134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8827    2.5882    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5096    2.0518    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2648    2.3839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9953    2.0006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1510    1.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9621    1.0394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2368    0.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0479    0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3226   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7005   -0.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9752   -1.1433    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4389   -1.7702    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8894   -0.2144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3531   -0.8413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6279   -1.6192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6147    0.5635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7902    0.5920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5790   -0.2055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8238   -0.5377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0933   -0.1543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5691   -0.6461    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0625    0.6559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8600    0.8671    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4738    1.2828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2984    1.2543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  2  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 18 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END


  Mrv1652309062200212D          

 26 28  0  0  1  0            999 V2000
    0.1048    2.3134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8827    2.5882    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5096    2.0518    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2648    2.3839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9953    2.0006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1510    1.1904    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9621    1.0394    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2368    0.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0479    0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3226   -0.6674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7005   -0.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9752   -1.1433    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4389   -1.7702    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8894   -0.2144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3531   -0.8413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6279   -1.6192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6147    0.5635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7902    0.5920    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5790   -0.2055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8238   -0.5377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0933   -0.1543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5691   -0.6461    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0625    0.6559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8600    0.8671    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4738    1.2828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2984    1.2543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  2  0  0  0  0
  6 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 18 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0220910

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN[C@H]1CCC2=CC(OC)=C(OC)C(OC)=C2C2=CC=C(O)C(=O)C=C12

> <INCHI_IDENTIFIER>
InChI=1S/C20H23NO5/c1-21-14-7-5-11-9-17(24-2)19(25-3)20(26-4)18(11)12-6-8-15(22)16(23)10-13(12)14/h6,8-10,14,21H,5,7H2,1-4H3,(H,22,23)/t14-/m0/s1

> <INCHI_KEY>
ATWWYGQDYGSWQA-AWEZNQCLSA-N

> <FORMULA>
C20H23NO5

> <MOLECULAR_WEIGHT>
357.406

> <EXACT_MASS>
357.157622845

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
49

> <JCHEM_AVERAGE_POLARIZABILITY>
38.211308246674264

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(10S)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0^{2,7}]hexadeca-1(16),2,4,6,11,14-hexaen-13-one

> <JCHEM_LOGP>
1.6755071201501588

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
18.869288512393695

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.6161674199193

> <JCHEM_PKA_STRONGEST_BASIC>
10.697114217642415

> <JCHEM_POLAR_SURFACE_AREA>
77.02000000000001

> <JCHEM_REFRACTIVITY>
101.95519999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(10S)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0^{2,7}]hexadeca-1(16),2,4,6,11,14-hexaen-13-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0       0.196   4.318   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       1.648   4.831   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       2.818   3.830   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.228   4.450   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.591   3.734   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.882   2.222   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.396   1.940   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.909   0.488   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       9.423   0.206   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       9.936  -1.246   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.908  -0.682   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       7.420  -2.134   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.419  -3.304   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.394  -0.400   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.393  -1.570   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.905  -3.022   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.881   1.052   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.342   1.105   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.947  -0.384   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.538  -1.004   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.174  -0.288   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.062  -1.206   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.117   1.224   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -1.605   1.619   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.885   2.395   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.424   2.341   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   26                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   17                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   14                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   11   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14    6   18                                                  
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   18    3                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₃NO₅

Average Mass

357.4060 Da

Monoisotopic Mass

357.15762 Da

IUPAC Name

(10S)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0^{2,7}]hexadeca-1(16),2,4,6,11,14-hexaen-13-one

Traditional Name

(10S)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0^{2,7}]hexadeca-1(16),2,4,6,11,14-hexaen-13-one

CAS Registry Number

Not Available

SMILES

CN[C@H]1CCC2=CC(OC)=C(OC)C(OC)=C2C2=CC=C(O)C(=O)C=C12

InChI Identifier

InChI=1S/C20H23NO5/c1-21-14-7-5-11-9-17(24-2)19(25-3)20(26-4)18(11)12-6-8-15(22)16(23)10-13(12)14/h6,8-10,14,21H,5,7H2,1-4H3,(H,22,23)/t14-/m0/s1

InChI Key

ATWWYGQDYGSWQA-AWEZNQCLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Colchicum ritchii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tropolones. Tropolones are compounds containing tropone ring with a hydroxyl group at ring position 2.

Kingdom

Organic compounds

Super Class

Hydrocarbon derivatives

Class

Tropones

Sub Class

Tropolones

Direct Parent

Tropolones

Alternative Parents

Substituents

Tropolone
Anisole
Alkyl aryl ether
Aralkylamine
Benzenoid
Cyclic ketone
Secondary aliphatic amine
Ether
Secondary amine
Organooxygen compound
Organonitrogen compound
Amine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.68	ChemAxon
pKa (Strongest Acidic)	9.62	ChemAxon
pKa (Strongest Basic)	10.7	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	77.02 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	101.96 m³·mol⁻¹	ChemAxon
Polarizability	38.21 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

205288

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

235315

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one (NP0220910)

MOL for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

3D MOL for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

3D SDF for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

3D-SDF for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

PDB for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

3D PDB for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

SMILES for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

INCHI for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

Structure for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)

3D Structure for NP0220910 ((10s)-14-hydroxy-3,4,5-trimethoxy-10-(methylamino)tricyclo[9.5.0.0²,⁷]hexadeca-1(16),2,4,6,11,14-hexaen-13-one)