NP-MRD: Showing NP-Card for (2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol (NP0220757)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 22:09:40 UTC

Updated at

2022-09-05 22:09:40 UTC

NP-MRD ID

NP0220757

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol

Description

Amphidinin A belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. (2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol was first documented in 2014 (PMID: 24836179). Based on a literature review very few articles have been published on Amphidinin A (PMID: 27373658).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309062200092D          

 26 26  0  0  1  0            999 V2000
   -3.6018   -1.9917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9344   -1.5067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1807   -1.8423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0206   -0.6863    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3532   -0.2013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4394    0.6191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7720    1.1041    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7720    1.9291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9874    2.1840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3229    2.9377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2729    2.5965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4416    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4416    1.3590    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1560    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1560    3.4215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8705    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5850    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5850    3.4215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2995    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0139    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0139    3.4215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7284    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4429    2.5965    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5025    1.5166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9874    0.8491    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7324    0.0645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
  9 24  1  0  0  0  0
 24 25  1  0  0  0  0
  7 25  1  0  0  0  0
 25 26  1  1  0  0  0
M  END

     RDKit          3D

 64 64  0  0  0  0  0  0  0  0999 V2000
    7.3294    0.8863   -1.0935 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2039    1.5862   -1.0228 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1025    2.6407    0.0192 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0998    1.3352   -1.9709 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8598    0.8419   -1.3621 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7574    0.6210   -0.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4625    0.1192    0.4931 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3851    0.4792   -0.2680 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4239   -0.5696   -0.1553 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0940   -0.6684    1.2160 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5704   -0.4784   -1.2347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5338   -1.5453   -1.4398 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2550   -2.3331   -2.5518 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7253   -1.9619   -0.7274 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4912   -2.6629    0.6001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9187   -1.1268   -0.6196 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0534   -0.0398    0.3643 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1119    0.9455    0.1709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4228    0.6170    0.2147 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6941    1.7204    1.1692 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.6219    1.2682    2.4976 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8377    2.9218    0.9715 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3199    3.9714    1.8090 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4049   -1.7514   -0.3897 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4536   -1.3673    0.6643 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7735   -2.0181    0.4015 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1491    1.0575   -0.4059 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4835    0.1088   -1.8418 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0907    3.0727    0.1164 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4153    2.2762    1.0300 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7780    3.5108   -0.2460 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9608    2.2746   -2.5483 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4330    0.5775   -2.7412 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9530    0.6325   -1.9675 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6054    0.7958    0.5908 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3701    0.5860    1.4948 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5172   -0.0925    1.9693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0005   -1.7281    1.6055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0969   -0.2512    1.3053 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0537   -0.3947   -2.2109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9970    0.5667   -1.2084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9104   -3.1373   -2.7741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3805   -2.0593   -3.1084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1165   -2.8767   -1.3753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2985   -3.4503    0.6921 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6363   -2.0225    1.4775 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5484   -3.2318    0.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8289   -1.8122   -0.4407 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2218   -0.7046   -1.6530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9665   -0.4940    1.3874 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2365    1.4492   -0.6693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2340   -0.1594    0.3473 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5644    0.9914   -0.8266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7670    2.0846    1.0052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7581    1.5965    2.8587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7610    2.7717    1.2599 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8432    3.3182   -0.0537 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2897    4.0632    1.6174 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8217   -1.6298   -1.3951 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9312   -2.7079   -0.1798 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0446   -1.7062    1.6373 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1030   -1.9635   -0.6390 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4934   -1.6321    1.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6460   -3.1110    0.6323 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 14  1  0
 14 16  1  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 14 12  1  0
 12 13  2  3
 12 11  1  0
  9 11  1  6
  9 10  1  0
  9 24  1  0
 24 25  1  0
 25 26  1  0
 25  7  1  0
  7  8  1  0
  7  6  1  0
  6  5  2  0
  5  4  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  3
  8  9  1  0
 15 45  1  0
 15 46  1  0
 15 47  1  0
 14 44  1  6
 16 48  1  0
 16 49  1  0
 17 50  1  1
 18 51  1  0
 19 52  1  0
 19 53  1  0
 20 54  1  6
 21 55  1  0
 22 56  1  0
 22 57  1  0
 23 58  1  0
 13 42  1  0
 13 43  1  0
 11 40  1  0
 11 41  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
 24 59  1  0
 24 60  1  0
 25 61  1  1
 26 62  1  0
 26 63  1  0
 26 64  1  0
  7 36  1  1
  6 35  1  0
  5 34  1  0
  4 32  1  0
  4 33  1  0
  3 29  1  0
  3 30  1  0
  3 31  1  0
  1 27  1  0
  1 28  1  0
M  END


  Mrv1652309062200092D          

 26 26  0  0  1  0            999 V2000
   -3.6018   -1.9917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9344   -1.5067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1807   -1.8423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0206   -0.6863    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3532   -0.2013    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4394    0.6191    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7720    1.1041    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7720    1.9291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9874    2.1840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3229    2.9377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2729    2.5965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4416    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4416    1.3590    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1560    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1560    3.4215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8705    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5850    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5850    3.4215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2995    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0139    2.5965    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0139    3.4215    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7284    2.1840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4429    2.5965    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5025    1.5166    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9874    0.8491    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7324    0.0645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
  9 24  1  0  0  0  0
 24 25  1  0  0  0  0
  7 25  1  0  0  0  0
 25 26  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0220757

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H](C[C@@H](O)C[C@@H](O)CO)C(=C)C[C@@]1(C)C[C@@H](C)[C@H](O1)\C=C\CC(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C22H38O4/c1-15(2)8-7-9-21-18(5)13-22(6,26-21)12-17(4)16(3)10-19(24)11-20(25)14-23/h7,9,16,18-21,23-25H,1,4,8,10-14H2,2-3,5-6H3/b9-7+/t16-,18+,19+,20+,21+,22-/m0/s1

> <INCHI_KEY>
SYQIFDIGMSUBBN-IKUTUVNCSA-N

> <FORMULA>
C22H38O4

> <MOLECULAR_WEIGHT>
366.542

> <EXACT_MASS>
366.277009704

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
43.74387175088491

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,4R,6S)-7-{[(2R,4R,5S)-2,4-dimethyl-5-[(1E)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol

> <JCHEM_LOGP>
3.0438659343333323

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.158979375323046

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.166696111219004

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7312293345401883

> <JCHEM_POLAR_SURFACE_AREA>
69.92

> <JCHEM_REFRACTIVITY>
108.0374

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,4R,6S)-7-{[(2R,4R,5S)-2,4-dimethyl-5-[(1E)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.723  -3.718   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.478  -2.813   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.071  -3.439   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -5.639  -1.281   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.393  -0.376   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.554   1.156   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.308   2.061   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -3.308   3.601   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -1.843   4.077   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.469   5.484   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.509   4.847   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.824   4.077   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.824   2.537   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.158   4.847   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.158   6.387   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.492   4.077   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.825   4.847   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.825   6.387   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.159   4.077   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.493   4.847   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       7.493   6.387   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       8.826   4.077   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      10.160   4.847   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -0.938   2.831   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -1.843   1.585   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.367   0.120   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   25                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11   24                                             
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22                                                            
CONECT   24    9   25                                                       
CONECT   25   24    7   26                                                  
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₈O₄

Average Mass

366.5420 Da

Monoisotopic Mass

366.27701 Da

IUPAC Name

(2R,4R,6S)-7-{[(2R,4R,5S)-2,4-dimethyl-5-[(1E)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol

Traditional Name

(2R,4R,6S)-7-{[(2R,4R,5S)-2,4-dimethyl-5-[(1E)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol

CAS Registry Number

Not Available

SMILES

C[C@@H](C[C@@H](O)C[C@@H](O)CO)C(=C)C[C@@]1(C)C[C@@H](C)[C@H](O1)\C=C\CC(C)=C

InChI Identifier

InChI=1S/C22H38O4/c1-15(2)8-7-9-21-18(5)13-22(6,26-21)12-17(4)16(3)10-19(24)11-20(25)14-23/h7,9,16,18-21,23-25H,1,4,8,10-14H2,2-3,5-6H3/b9-7+/t16-,18+,19+,20+,21+,22-/m0/s1

InChI Key

SYQIFDIGMSUBBN-IKUTUVNCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
Tetrahydrofuran
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.04	ChemAxon
pKa (Strongest Acidic)	14.17	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.92 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	108.04 m³·mol⁻¹	ChemAxon
Polarizability	43.74 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

32674972

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

122218512

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kubota T, Sato H, Iwai T, Kobayashi J: Biosynthetic Study of Amphidinin A and Amphidinolide P. Chem Pharm Bull (Tokyo). 2016;64(7):979-81. doi: 10.1248/cpb.c16-00202. [PubMed:27373658 ]
Iwai T, Kubota T, Kobayashi J: Absolute configuration of amphidinin A. J Nat Prod. 2014 Jun 27;77(6):1541-4. doi: 10.1021/np5003065. Epub 2014 May 16. [PubMed:24836179 ]
LOTUS database [Link]

Showing NP-Card for (2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol (NP0220757)

MOL for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

3D MOL for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

3D SDF for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

3D-SDF for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

PDB for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

3D PDB for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

SMILES for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

INCHI for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

Structure for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)

3D Structure for NP0220757 ((2r,4r,6s)-7-{[(2r,4r,5s)-2,4-dimethyl-5-[(1e)-4-methylpenta-1,4-dien-1-yl]oxolan-2-yl]methyl}-6-methyloct-7-ene-1,2,4-triol)