NP-MRD: Showing NP-Card for (3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol (NP0220622)

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Record Information

Version

1.0

Created at

2022-09-05 21:59:32 UTC

Updated at

2022-09-05 21:59:32 UTC

NP-MRD ID

NP0220622

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol

Description

(3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]Dodec-9-en-11-ol belongs to the class of organic compounds known as chamigranes. These are sesquiterpenoids characterized by a 1,1,5,9-tetramethylspiro[5,5]undecane skeleton, formally obtained by linking the C1-C6 and C6-C11 of farnesane together. They are predominantly isolated from algae. (3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol is found in Laurencia dendroidea and Laurencia translucida. It was first documented in 2022 (PMID: 36075691). Based on a literature review a significant number of articles have been published on (3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]Dodec-9-en-11-ol (PMID: 36075690) (PMID: 36075689) (PMID: 36075688) (PMID: 36075687).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309052223592D          

 20 22  0  0  1  0            999 V2000
    0.7674   -0.4990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9266   -1.3085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1363   -1.0717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4962   -0.8483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9983   -0.1705    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8166   -0.2689    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3022    0.3981    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    3.1643   -1.0230    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8394   -0.5489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7517   -1.6023    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.6962   -1.7099    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8606   -1.6558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1929   -2.2413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4251   -1.8190    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0857   -2.4669    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -0.1668   -1.1688    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0602   -0.3400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9036   -0.1920    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7778    0.6234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5044    0.3735    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  1  0  0  0
  8 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  2 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
  4 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0220622

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)[C@@]2(Br)OC3C[C@](C)(Cl)[C@@H](Br)CC13[C@](C)(O)C=C2

> <INCHI_IDENTIFIER>
InChI=1S/C15H21Br2ClO2/c1-11(2)14-7-9(16)12(3,18)8-10(14)20-15(11,17)6-5-13(14,4)19/h5-6,9-10,19H,7-8H2,1-4H3/t9-,10?,12-,13+,14?,15-/m0/s1

> <INCHI_KEY>
WNGMEQXERFPHIP-GZRHPQKFSA-N

> <FORMULA>
C15H21Br2ClO2

> <MOLECULAR_WEIGHT>
428.59

> <EXACT_MASS>
425.959684

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
35.3993313795067

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0^{1,6}]dodec-9-en-11-ol

> <JCHEM_LOGP>
3.863119274666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.070445467623617

> <JCHEM_PKA_STRONGEST_BASIC>
-3.20538715246143

> <JCHEM_POLAR_SURFACE_AREA>
29.46

> <JCHEM_REFRACTIVITY>
88.67

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0^{1,6}]dodec-9-en-11-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.432  -0.931   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.730  -2.443   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.254  -2.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.793  -1.583   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.730  -0.318   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.258  -0.502   0.000  0.00  0.00           C+0
HETATM    7 Br   UNK     0       6.164   0.743   0.000  0.00  0.00          Br+0
HETATM    8  C   UNK     0       5.907  -1.910   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.167  -1.025   0.000  0.00  0.00           C+0
HETATM   10 Cl   UNK     0       7.003  -2.991   0.000  0.00  0.00          Cl+0
HETATM   11  C   UNK     0       5.033  -3.192   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.473  -3.091   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.227  -4.184   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       0.793  -3.395   0.000  0.00  0.00           C+0
HETATM   15 Br   UNK     0      -0.160  -4.605   0.000  0.00  0.00          Br+0
HETATM   16  C   UNK     0      -0.311  -2.182   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.112  -0.635   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.687  -0.358   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.452   1.164   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.808   0.697   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4   14                                             
CONECT    3    2                                                            
CONECT    4    2    5   12   18                                             
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   11                                             
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    8   12                                                       
CONECT   12   11    4   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13    2   15   16                                             
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    4   19   20                                             
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₁Br₂ClO₂

Average Mass

428.5900 Da

Monoisotopic Mass

425.95968 Da

IUPAC Name

(3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0^{1,6}]dodec-9-en-11-ol

Traditional Name

(3S,4S,8R,11R)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0^{1,6}]dodec-9-en-11-ol

CAS Registry Number

Not Available

SMILES

CC1(C)[C@@]2(Br)OC3C[C@](C)(Cl)[C@@H](Br)CC13[C@](C)(O)C=C2

InChI Identifier

InChI=1S/C15H21Br2ClO2/c1-11(2)14-7-9(16)12(3,18)8-10(14)20-15(11,17)6-5-13(14,4)19/h5-6,9-10,19H,7-8H2,1-4H3/t9-,10?,12-,13+,14?,15-/m0/s1

InChI Key

WNGMEQXERFPHIP-GZRHPQKFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Laurencia dendroidea	LOTUS Database	35616633
Laurencia translucida	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as chamigranes. These are sesquiterpenoids characterized by a 1,1,5,9-tetramethylspiro[5,5]undecane skeleton, formally obtained by linking the C1-C6 and C6-C11 of farnesane together. They are predominantly isolated from algae.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Chamigranes

Alternative Parents

Substituents

Chamigrane sesquiterpenoid
Tetrahydrofuran
Tertiary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organochloride
Organobromide
Organohalogen compound
Alkyl halide
Alkyl chloride
Alkyl bromide
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.86	ChemAxon
pKa (Strongest Acidic)	14.07	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	29.46 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	88.67 m³·mol⁻¹	ChemAxon
Polarizability	35.4 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163186105

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Abioye AI, Sudfeld CR, Hughes MD, Aboud S, Muhihi A, Ulenga N, Nagu TJ, Wang M, Mugusi F, Fawzi WW: Iron status among HIV-infected adults during the first year of antiretroviral therapy in Tanzania. HIV Med. 2022 Sep 8. doi: 10.1111/hiv.13396. [PubMed:36075691 ]
Authors unspecified: Resources Round-up. Altern Lab Anim. 2022 Sep 8:2611929221121256. doi: 10.1177/02611929221121256. [PubMed:36075690 ]
Kim JU, Khan W, Arowoshola L, Ahmad M: Correspondence. Eur Heart J Qual Care Clin Outcomes. 2022 Aug 26. pii: 6677390. doi: 10.1093/ehjqcco/qcac051. [PubMed:36075689 ]
DaVault L: Field Amputations Facilitated by a Surgical Extraction Team. Am Surg. 2022 Sep 8:31348221114521. doi: 10.1177/00031348221114521. [PubMed:36075688 ]
Szanyi J, Walles JK, Tesfaye F, Gudeta AN, Bjorkman P: Intrauterine HIV exposure is associated with linear growth restriction among Ethiopian children in the first 18 months of life. Trop Med Int Health. 2022 Sep;27(9):823-830. doi: 10.1111/tmi.13805. Epub 2022 Aug 17. [PubMed:36075687 ]
LOTUS database [Link]

Showing NP-Card for (3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol (NP0220622)

MOL for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

3D MOL for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

3D SDF for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

3D-SDF for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

PDB for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

3D PDB for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

SMILES for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

INCHI for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

Structure for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)

3D Structure for NP0220622 ((3s,4s,8r,11r)-3,8-dibromo-4-chloro-4,11,12,12-tetramethyl-7-oxatricyclo[6.3.1.0¹,⁶]dodec-9-en-11-ol)