NP-MRD: Showing NP-Card for methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate (NP0220510)

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Record Information

Version

2.0

Created at

2022-09-05 21:50:35 UTC

Updated at

2022-09-05 21:50:35 UTC

NP-MRD ID

NP0220510

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate

Description

Methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole. methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate is found in Stellaria dichotoma. Methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261505202D          

 25 27  0  0  0  0            999 V2000
   -1.8357    2.4900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2837    1.8769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5386    1.0923    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3456    0.9208    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9866    0.4792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2415   -0.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6895   -0.9185    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1175   -0.7470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3724    0.0377    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6695   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4765   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0285   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8535   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4056   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2125   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4675   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9154   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1085   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4410   -3.0712    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7736   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9666   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4146   -2.1447    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7117   -3.5424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0953   -3.7139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2637   -4.1555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 13 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 12 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 10 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
M  END

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
    7.9423   -0.0287    0.5861 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5610   -0.0694    0.8005 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8862   -1.2681    0.8311 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5868   -2.3585    0.6845 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4824   -1.4615    0.9964 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7414   -0.3571    1.1524 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2991   -0.4943    1.3053 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5750   -0.0779    0.1852 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2500    0.3842   -0.8181 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1416   -0.0875   -0.0134 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5582    1.1256    0.1243 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9110    1.1353   -0.1738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5931    0.0206   -0.5943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9166    0.2851   -0.7400 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1195    1.5894   -0.4003 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2300    2.4129   -0.2937 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1544    3.7174    0.1522 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9165    4.2234    0.4976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7710    3.4497    0.4106 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8942    2.1197   -0.0479 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8492   -1.1683   -0.7107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4960   -2.3354   -1.3266 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4812   -3.5894   -0.4677 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4825   -2.6996   -2.3523 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5415   -1.1657   -0.4185 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.1612   -0.9479   -0.0624 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4758   -0.1354    1.5429 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2220    0.8436   -0.0109 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0328   -2.4375    0.9840 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1903    0.6301    1.1646 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8536   -0.8418    2.1251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0372    1.9895    0.4656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6456   -0.3792   -1.0754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1723    1.9981   -0.5576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0659    4.2982    0.2369 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7849    5.2343    0.8762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7886    3.7795    0.6664 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3773   -2.1493   -1.9198 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2426   -3.4057    0.5901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5805   -3.9546   -0.5391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8946   -4.4232   -0.8397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8968   -3.4003   -1.9676 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 20  2  0
 20 19  1  0
 19 18  2  0
 18 17  1  0
 17 16  2  0
 13 21  1  0
 21 25  2  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 25 10  1  0
 20 12  1  0
 16 15  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  5 29  1  0
  6 30  1  0
  7 31  1  0
 11 32  1  0
 14 33  1  0
 19 37  1  0
 18 36  1  0
 17 35  1  0
 16 34  1  0
 22 38  1  6
 23 39  1  0
 23 40  1  0
 23 41  1  0
 24 42  1  0
M  END


  Mrv1533004261505202D          

 25 27  0  0  0  0            999 V2000
   -1.8357    2.4900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2837    1.8769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5386    1.0923    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3456    0.9208    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9866    0.4792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2415   -0.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6895   -0.9185    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1175   -0.7470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3724    0.0377    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6695   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4765   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0285   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8535   -1.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4056   -1.1885    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2125   -1.3601    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4675   -2.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9154   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1085   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4410   -3.0712    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7736   -2.5862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9666   -2.7578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4146   -2.1447    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7117   -3.5424    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0953   -3.7139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2637   -4.1555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  4  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 13 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 12 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 10 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0220510

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C=CNC(=O)C1=CC2=C(NC3=C2C=CC=C3)C(=N1)C(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C18H17N3O4/c1-10(22)16-17-12(11-5-3-4-6-13(11)20-17)9-14(21-16)18(24)19-8-7-15(23)25-2/h3-10,20,22H,1-2H3,(H,19,24)

> <INCHI_KEY>
WZPSGPNOBZBZCX-UHFFFAOYSA-N

> <FORMULA>
C18H17N3O4

> <MOLECULAR_WEIGHT>
339.351

> <EXACT_MASS>
339.121906039

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
36.30848892377809

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate

> <ALOGPS_LOGP>
1.88

> <JCHEM_LOGP>
1.526306478666667

> <ALOGPS_LOGS>
-3.97

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.193792927904457

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.820536045788549

> <JCHEM_PKA_STRONGEST_BASIC>
0.5122362241561574

> <JCHEM_POLAR_SURFACE_AREA>
104.31

> <JCHEM_REFRACTIVITY>
91.48290000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.66e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0      -3.427   4.648   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.396   3.504   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.872   2.039   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -4.378   1.719   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.842   0.895   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.317  -0.570   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      -1.287  -1.715   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       0.219  -1.394   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.695   0.070   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.250  -2.539   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.756  -2.219   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.787  -3.363   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.327  -3.363   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.357  -2.219   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.863  -2.539   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.339  -4.003   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.309  -5.148   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.802  -4.828   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       4.557  -5.733   0.000  0.00  0.00           N+0
HETATM   20  C   UNK     0       3.311  -4.828   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.804  -5.148   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       0.774  -4.003   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       1.328  -6.612   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.178  -6.933   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.359  -7.757   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   22                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   20                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   12   21                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21   10                                                       
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

View in JSmol

Synonyms

Value	Source
Methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoic acid	Generator

Chemical Formula

C₁₈H₁₇N₃O₄

Average Mass

339.3510 Da

Monoisotopic Mass

339.12191 Da

IUPAC Name

methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate

Traditional Name

methyl 3-{[1-(1-hydroxyethyl)-9H-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate

CAS Registry Number

Not Available

SMILES

COC(=O)C=CNC(=O)C1=CC2=C(NC3=C2C=CC=C3)C(=N1)C(C)O

InChI Identifier

InChI=1S/C18H17N3O4/c1-10(22)16-17-12(11-5-3-4-6-13(11)20-17)9-14(21-16)18(24)19-8-7-15(23)25-2/h3-10,20,22H,1-2H3,(H,19,24)

InChI Key

WZPSGPNOBZBZCX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Stellaria dichotoma	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as harmala alkaloids. Harmala alkaloids are compounds with a structure based on harmaline, harmine, harmalol, harman or a derivative of those parents. These parents are beta-carbolines, consisting of a pyrimidine fused to the pyrrole moiety of an indole to form a pyrido[3,4-b]indole.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Harmala alkaloids

Sub Class

Not Available

Direct Parent

Harmala alkaloids

Alternative Parents

Substituents

Harman
Beta-carboline
Pyridoindole
Indole
Indole or derivatives
Pyridine carboxylic acid or derivatives
2-heteroaryl carboxamide
Pyridine
Benzenoid
Acrylic acid or derivatives
Heteroaromatic compound
Vinylogous amide
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Pyrrole
Carboxamide group
Carboxylic acid ester
Secondary carboxylic acid amide
Secondary alcohol
Azacycle
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Aromatic alcohol
Organic nitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.88	ALOGPS
logP	1.53	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	11.82	ChemAxon
pKa (Strongest Basic)	0.51	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	104.31 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	91.48 m³·mol⁻¹	ChemAxon
Polarizability	36.31 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73095417

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate (NP0220510)

MOL for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

3D MOL for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

3D SDF for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

3D-SDF for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

PDB for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

3D PDB for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

SMILES for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

INCHI for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

Structure for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)

3D Structure for NP0220510 (methyl 3-{[1-(1-hydroxyethyl)-9h-pyrido[3,4-b]indol-3-yl]formamido}prop-2-enoate)