NP-MRD: Showing NP-Card for methyl (2e,4z,6z)-deca-2,4,6-trienoate (NP0220275)

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Record Information

Version

2.0

Created at

2022-09-05 21:32:22 UTC

Updated at

2022-09-05 21:32:22 UTC

NP-MRD ID

NP0220275

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (2e,4z,6z)-deca-2,4,6-trienoate

Description

Methyl 2e,4z,6z-decatrienoate belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. methyl (2e,4z,6z)-deca-2,4,6-trienoate is found in Thyanta pallidovirens. methyl (2e,4z,6z)-deca-2,4,6-trienoate was first documented in 2008 (PMID: 19061033). Based on a literature review very few articles have been published on Methyl 2e,4z,6z-decatrienoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
   -4.9214   -0.9423   -2.2541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0898   -0.1956   -1.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1015   -1.1864   -0.5942 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3278   -0.4007    0.3825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0013   -0.2460    0.3388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1837   -0.8370   -0.6774 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1131   -0.6778   -0.7084 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8157    0.1005    0.2721 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1487    0.2607    0.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8512    1.0582    1.2434 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2434    1.6254    2.1831 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2140    1.2069    1.1839 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9983    1.9399    2.0828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8490   -1.3112   -1.7797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1965   -0.2523   -3.0566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3258   -1.7957   -2.6814 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7273    0.1863   -0.4214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5400    0.6121   -1.7372 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7761   -1.9216   -0.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5505   -1.6709   -1.3839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8313    0.1124    1.2231 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5486    0.3532    1.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6597   -1.4559   -1.4740 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6918   -1.1734   -1.5389 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3048    0.5823    1.0692 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6549   -0.2320   -0.5766 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0570    1.8528    1.7862 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6446    2.9743    2.1966 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8926    1.4341    3.0837 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  2 17  1  0
  2 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 13 27  1  0
 13 28  1  0
 13 29  1  0
M  END

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       9.240   2.667   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.470   1.334   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.930   1.334   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.160   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.620   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.850   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.540   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.770  -1.334   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.000  -2.667   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -2.310  -1.334   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -3.080  -2.667   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12                                                            
MASTER        0    0    0    0    0    0    0    0   13    0   24    0
END

View in JSmol

Synonyms

Value	Source
Methyl 2E,4Z,6Z-decatrienoic acid	Generator

Chemical Formula

C₁₁H₁₆O₂

Average Mass

180.2470 Da

Monoisotopic Mass

180.11503 Da

IUPAC Name

methyl (2E,4Z,6Z)-deca-2,4,6-trienoate

Traditional Name

methyl (2E,4Z,6Z)-deca-2,4,6-trienoate

CAS Registry Number

Not Available

SMILES

CCC\C=C/C=C\C=C\C(=O)OC

InChI Identifier

InChI=1S/C11H16O2/c1-3-4-5-6-7-8-9-10-11(12)13-2/h5-10H,3-4H2,1-2H3/b6-5-,8-7-,10-9+

InChI Key

DLNQRJFVXCCDKL-YXABPGESSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Thyanta pallidovirens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Fatty acid esters

Alternative Parents

Substituents

Fatty acid ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Wax monoesters (LMFA07010482 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.24	ChemAxon
pKa (Strongest Basic)	-6.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	57.57 m³·mol⁻¹	ChemAxon
Polarizability	20.99 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9919936

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11745232

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Moraes MC, Pareja M, Laumann RA, Borges M: The chemical volatiles (semiochemicals) produced by neotropical stink bugs (Hemiptera: Pentatomidae). Neotrop Entomol. 2008 Sep-Oct;37(5):489-505. doi: 10.1590/s1519-566x2008000500001. [PubMed:19061033 ]
LOTUS database [Link]

Showing NP-Card for methyl (2e,4z,6z)-deca-2,4,6-trienoate (NP0220275)

MOL for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

3D MOL for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

3D SDF for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

3D-SDF for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

PDB for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

3D PDB for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

SMILES for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

INCHI for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

Structure for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)

3D Structure for NP0220275 (methyl (2e,4z,6z)-deca-2,4,6-trienoate)