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Record Information
Version2.0
Created at2022-09-05 21:27:42 UTC
Updated at2022-09-05 21:27:43 UTC
NP-MRD IDNP0220212
Secondary Accession NumbersNone
Natural Product Identification
Common Nameallocholic acid
DescriptionAllocholic acid, also known as allocholate or 5alpha-cholate, belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups. allocholic acid is found in Petromyzon marinus. allocholic acid was first documented in 1962 (PMID: 14012853). Allocholic acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral (PMID: 2079611) (PMID: 11344576) (PMID: 11041240) (PMID: 3660436) (PMID: 6825311) (PMID: 7150258).
Structure
Thumb
Synonyms
ValueSource
3alpha,7alpha,12alpha-Trihydroxy-5alpha-cholanoic acidChEBI
5alpha-Cholic acidChEBI
AllocholateKegg
(3a,5a,7a,12a)-3,7,12-Trihydroxycholan-24-OateGenerator
(3a,5a,7a,12a)-3,7,12-Trihydroxycholan-24-Oic acidGenerator
(3alpha,5alpha,7alpha,12alpha)-3,7,12-Trihydroxycholan-24-OateGenerator
(3Α,5α,7α,12α)-3,7,12-trihydroxycholan-24-OateGenerator
(3Α,5α,7α,12α)-3,7,12-trihydroxycholan-24-Oic acidGenerator
3a,7a,12a-Trihydroxy-5a-cholanoateGenerator
3a,7a,12a-Trihydroxy-5a-cholanoic acidGenerator
3alpha,7alpha,12alpha-Trihydroxy-5alpha-cholanoateGenerator
5a-CholateGenerator
5a-Cholic acidGenerator
5alpha-CholateGenerator
(3alpha,5beta,7alpha,12alpha)-3,7,12-Trihydroxycholan-24-Oic acidHMDB
(3a,5b,7a,12a)-3,7,12-Trihydroxycholan-24-OateHMDB
(3a,5b,7a,12a)-3,7,12-Trihydroxycholan-24-Oic acidHMDB
(3alpha,5beta,7alpha,12alpha)-3,7,12-Trihydroxycholan-24-OateHMDB
(3Α,5β,7α,12α)-3,7,12-trihydroxycholan-24-OateHMDB
(3Α,5β,7α,12α)-3,7,12-trihydroxycholan-24-Oic acidHMDB
3a,7a,12a-Trihydroxy-5b-cholan-24-OateHMDB
3a,7a,12a-Trihydroxy-5b-cholan-24-Oic acidHMDB
3a,7a,12a-TrihydroxycholanateHMDB
3a,7a,12a-Trihydroxycholanic acidHMDB
5alpha-Allocholic acidHMDB
5Α-allocholic acidHMDB
Allocholic acidHMDB
Chemical FormulaC24H40O5
Average Mass408.5790 Da
Monoisotopic Mass408.28757 Da
IUPAC Name(4R)-4-[(1S,2S,5R,7R,9R,10R,11S,14R,15R,16S)-5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]pentanoic acid
Traditional Name(4R)-4-[(1S,2S,5R,7R,9R,10R,11S,14R,15R,16S)-5,9,16-trihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]pentanoic acid
CAS Registry NumberNot Available
SMILES
[H][C@@]1(CC[C@@]2([H])[C@]3([H])[C@H](O)C[C@@]4([H])C[C@H](O)CC[C@]4(C)[C@@]3([H])C[C@H](O)[C@]12C)[C@H](C)CCC(O)=O
InChI Identifier
InChI=1S/C24H40O5/c1-13(4-7-21(28)29)16-5-6-17-22-18(12-20(27)24(16,17)3)23(2)9-8-15(25)10-14(23)11-19(22)26/h13-20,22,25-27H,4-12H2,1-3H3,(H,28,29)/t13-,14-,15-,16-,17+,18+,19-,20+,22+,23+,24-/m1/s1
InChI KeyBHQCQFFYRZLCQQ-PGHAKIONSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Petromyzon marinusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as trihydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears three hydroxyl groups.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentTrihydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Trihydroxy bile acid, alcohol, or derivatives
  • 3-hydroxysteroid
  • 12-hydroxysteroid
  • 7-hydroxysteroid
  • 3-alpha-hydroxysteroid
  • Hydroxysteroid
  • Cyclic alcohol
  • Secondary alcohol
  • Carboxylic acid derivative
  • Carboxylic acid
  • Polyol
  • Monocarboxylic acid or derivatives
  • Organic oxide
  • Alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.26ALOGPS
logP2.48ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)4.48ChemAxon
pKa (Strongest Basic)-0.16ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area97.99 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity110.79 m³·mol⁻¹ChemAxon
Polarizability47.2 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0000505
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB011602
KNApSAcK IDNot Available
Chemspider ID141151
KEGG Compound IDC17737
BioCyc IDCPD-16581
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID5491
PubChem Compound160636
PDB IDNot Available
ChEBI ID81308
Good Scents IDNot Available
References
General References
  1. Kuramoto T, Furukawa Y, Nishina T, Sugimoto T, Mahara R, Tohma M, Kihira K, Hoshita T: Identification of short side chain bile acids in urine of patients with cerebrotendinous xanthomatosis. J Lipid Res. 1990 Oct;31(10):1895-902. [PubMed:2079611 ]
  2. Salen G, Tint GS, Eliav B, Deering N, Mosbach EH: Increased formation of ursodeoxycholic acid in patients treated with chenodeoxycholic acid. J Clin Invest. 1974 Feb;53(2):612-21. [PubMed:11344576 ]
  3. Kuramoto T, Miyamoto J, Konishi M, Hoshita T, Masul T, Une M: Bile acids in porcine fetal bile. Biol Pharm Bull. 2000 Oct;23(10):1143-6. doi: 10.1248/bpb.23.1143. [PubMed:11041240 ]
  4. Kihira K, Shimazu K, Kuwabara M, Yoshii M, Takeuchi H, Nakano I, Ozawa S, Onuki M, Hatta Y, Hoshita T: Bile acid profiles in bile, urine, and feces of a patient with cerebrotendinous xanthomatosis. Steroids. 1986 Jul-Aug;48(1-2):109-19. doi: 10.1016/0039-128x(86)90045-0. [PubMed:3660436 ]
  5. Amuro Y, Hayashi E, Endo T, Higashino K, Kishimoto S: Unusual trihydroxylated bile acids in urine of patients with liver cirrhosis. Clin Chim Acta. 1983 Jan 7;127(1):61-7. doi: 10.1016/0009-8981(83)90075-x. [PubMed:6825311 ]
  6. Clayton PT, Muller DP, Lawson AM: The bile acid composition of gastric contents from neonates with high intestinal obstruction. Biochem J. 1982 Sep 15;206(3):489-98. doi: 10.1042/bj2060489. [PubMed:7150258 ]
  7. Yun SS, Scott AP, Siefkes MJ, Li W: Development and application of an ELISA for a sex pheromone released by the male sea lamprey (Petromyzon marinus L.). Gen Comp Endocrinol. 2002 Dec;129(3):163-70. doi: 10.1016/s0016-6480(02)00517-8. [PubMed:12460600 ]
  8. Ali SS, Farhat H, Elliott WH: Bile acids. XLIX. Allocholic acid, the major bile acid of Uromastix hardwickii. J Lipid Res. 1976 Jan;17(1):21-4. [PubMed:1255017 ]
  9. Goto T, Holzinger F, Hagey LR, Cerre C, Ton-Nu HT, Schteingart CD, Steinbach JH, Shneider BL, Hofmann AF: Physicochemical and physiological properties of 5alpha-cyprinol sulfate, the toxic bile salt of cyprinid fish. J Lipid Res. 2003 Sep;44(9):1643-51. doi: 10.1194/jlr.M300155-JLR200. Epub 2003 Jun 16. [PubMed:12810826 ]
  10. ANDERSON IG, HASLEWOOD GA: Comparative studiesof 'bile salts'. 15. The natural occurrence and preparation of allocholic acid. Biochem J. 1962 Oct;85(1):236-42. doi: 10.1042/bj0850236. [PubMed:14012853 ]
  11. KARAVOLAS HJ, ELLIOTT WH, HSIA SL, DOISY EA Jr, MATSCHINER JT, THAYER SA, DOISY EA: BILE ACIDS. XXII. ALLOCHOLIC ACID, A METABOLITE OF 5-ALPHA-CHOLESTAN-3-BET-A-OL IN THE RAT. J Biol Chem. 1965 Apr;240:1568-72. [PubMed:14285492 ]
  12. Siefkes MJ, Li W: Electrophysiological evidence for detection and discrimination of pheromonal bile acids by the olfactory epithelium of female sea lampreys ( Petromyzon marinus). J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2004 Mar;190(3):193-9. doi: 10.1007/s00359-003-0484-1. Epub 2003 Dec 20. [PubMed:14689221 ]
  13. Venkatachalam KV: Petromyzonol sulfate and its derivatives: the chemoattractants of the sea lamprey. Bioessays. 2005 Feb;27(2):222-8. doi: 10.1002/bies.20155. [PubMed:15666352 ]
  14. Fine JM, Vrieze LA, Sorensen PW: Evidence that petromyzontid lampreys employ a common migratory pheromone that is partially comprised of bile acids. J Chem Ecol. 2004 Nov;30(11):2091-110. doi: 10.1023/b:joec.0000048776.16091.b1. [PubMed:15672658 ]
  15. LOTUS database [Link]