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Record Information
Version2.0
Created at2022-09-05 21:00:55 UTC
Updated at2022-09-05 21:00:56 UTC
NP-MRD IDNP0219877
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate
DescriptionPolyketomycin belongs to the class of organic compounds known as anthraquinone glycosides. These are organic compounds containing an anthraquinone moiety glycosidically bound to a carbohydrate moiety. (2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate is found in Streptomyces diastatochromogenes and Streptomyces minoensis. (2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate was first documented in 2009 (PMID: 19266534). Based on a literature review a small amount of articles have been published on Polyketomycin (PMID: 26484067) (PMID: 29341603) (PMID: 28270798) (PMID: 28117820).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC44H48O18
Average Mass864.8500 Da
Monoisotopic Mass864.28406 Da
IUPAC Name(2S,3R,4R,6S)-6-{[(2R,3S,6S)-6-{[(1S,4aS,12aR)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,2,4a,5,7,10,12,12a-octahydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate
Traditional Name(2S,3R,4R,6S)-6-{[(2R,3S,6S)-6-{[(1S,4aS,12aR)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate
CAS Registry NumberNot Available
SMILES
COC1=CC(=O)C2=C(O)C3=C(C[C@@]4(O)[C@H](O[C@H]5CC[C@H](O[C@H]6C[C@@](C)(O)[C@H](OC(=O)C7=C(C)C=CC(C)=C7O)[C@H](C)O6)[C@@H](C)O5)C(=O)C(C(C)=O)=C(O)[C@@]4(O)C3=O)C(C)=C2C1=O
InChI Identifier
InChI=1S/C44H48O18/c1-16-9-10-17(2)33(47)28(16)41(53)62-39-21(6)59-27(15-42(39,7)54)60-24-11-12-26(58-20(24)5)61-40-36(50)30(19(4)45)37(51)44(56)38(52)31-22(14-43(40,44)55)18(3)29-32(35(31)49)23(46)13-25(57-8)34(29)48/h9-10,13,20-21,24,26-27,39-40,47,49,51,54-56H,11-12,14-15H2,1-8H3/t20-,21+,24+,26+,27+,39-,40-,42-,43-,44-/m1/s1
InChI KeyIFCBPTPGDINHLK-VSYKUZCLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces diastatochromogenesLOTUS Database
Streptomyces minoensisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as anthraquinone glycosides. These are organic compounds containing an anthraquinone moiety glycosidically bound to a carbohydrate moiety.
KingdomOrganic compounds
Super ClassBenzenoids
ClassAnthracenes
Sub ClassAnthraquinones
Direct ParentAnthraquinone glycosides
Alternative Parents
Substituents
  • Anthraquinone glycoside
  • O-hydroxybenzoic acid ester
  • O-glycosyl compound
  • Glycosyl compound
  • Disaccharide
  • Naphthalene
  • Salicylic acid or derivatives
  • Tetralin
  • Benzoate ester
  • P-xylenol
  • Xylenol
  • Benzoic acid or derivatives
  • M-cresol
  • O-cresol
  • Quinone
  • P-xylene
  • Xylene
  • Benzoyl
  • Aryl ketone
  • Aryl alkyl ketone
  • Phenol
  • Cyclohexenone
  • 1-hydroxy-4-unsubstituted benzenoid
  • Monocyclic benzene moiety
  • Oxane
  • Tertiary alcohol
  • Vinylogous acid
  • Vinylogous ester
  • Carboxylic acid ester
  • Cyclic ketone
  • Ketone
  • Polyol
  • Enol
  • Acetal
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Aldehyde
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.13ChemAxon
pKa (Strongest Acidic)0.25ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area279.18 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity216.37 m³·mol⁻¹ChemAxon
Polarizability87.88 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00015992
Chemspider ID4677656
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5747698
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Khatri I, Subramanian S, Mayilraj S: Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T). Genom Data. 2014 Mar 12;2:44-5. doi: 10.1016/j.gdata.2013.12.003. eCollection 2014 Dec. [PubMed:26484067 ]
  2. Guo X, Crnovcic I, Chang CY, Luo J, Lohman JR, Papinski M, Bechthold A, Horsman GP, Shen B: PokMT1 from the Polyketomycin Biosynthetic Machinery of Streptomyces diastatochromogenes Tu6028 Belongs to the Emerging Family of C-Methyltransferases That Act on CoA-Activated Aromatic Substrates. Biochemistry. 2018 Feb 13;57(6):1003-1011. doi: 10.1021/acs.biochem.7b01219. Epub 2018 Jan 30. [PubMed:29341603 ]
  3. Greule A, Marolt M, Deubel D, Peintner I, Zhang S, Jessen-Trefzer C, De Ford C, Burschel S, Li SM, Friedrich T, Merfort I, Ludeke S, Bisel P, Muller M, Paululat T, Bechthold A: Wide Distribution of Foxicin Biosynthetic Gene Clusters in Streptomyces Strains - An Unusual Secondary Metabolite with Various Properties. Front Microbiol. 2017 Feb 21;8:221. doi: 10.3389/fmicb.2017.00221. eCollection 2017. [PubMed:28270798 ]
  4. Greule A, Zhang S, Paululat T, Bechthold A: From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tu6028. J Vis Exp. 2017 Jan 13;(119):54952. doi: 10.3791/54952. [PubMed:28117820 ]
  5. Daum M, Peintner I, Linnenbrink A, Frerich A, Weber M, Paululat T, Bechthold A: Organisation of the biosynthetic gene cluster and tailoring enzymes in the biosynthesis of the tetracyclic quinone glycoside antibiotic polyketomycin. Chembiochem. 2009 Apr 17;10(6):1073-83. doi: 10.1002/cbic.200800823. [PubMed:19266534 ]
  6. LOTUS database [Link]