| Record Information |
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| Version | 2.0 |
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| Created at | 2022-09-05 21:00:55 UTC |
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| Updated at | 2022-09-05 21:00:56 UTC |
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| NP-MRD ID | NP0219877 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | (2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate |
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| Description | Polyketomycin belongs to the class of organic compounds known as anthraquinone glycosides. These are organic compounds containing an anthraquinone moiety glycosidically bound to a carbohydrate moiety. (2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate is found in Streptomyces diastatochromogenes and Streptomyces minoensis. (2s,3r,4r,6s)-6-{[(2r,3s,6s)-6-{[(1s,4as,12ar)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate was first documented in 2009 (PMID: 19266534). Based on a literature review a small amount of articles have been published on Polyketomycin (PMID: 26484067) (PMID: 29341603) (PMID: 28270798) (PMID: 28117820). |
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| Structure | COC1=CC(=O)C2=C(O)C3=C(C[C@@]4(O)[C@H](O[C@H]5CC[C@H](O[C@H]6C[C@@](C)(O)[C@H](OC(=O)C7=C(C)C=CC(C)=C7O)[C@H](C)O6)[C@@H](C)O5)C(=O)C(C(C)=O)=C(O)[C@@]4(O)C3=O)C(C)=C2C1=O InChI=1S/C44H48O18/c1-16-9-10-17(2)33(47)28(16)41(53)62-39-21(6)59-27(15-42(39,7)54)60-24-11-12-26(58-20(24)5)61-40-36(50)30(19(4)45)37(51)44(56)38(52)31-22(14-43(40,44)55)18(3)29-32(35(31)49)23(46)13-25(57-8)34(29)48/h9-10,13,20-21,24,26-27,39-40,47,49,51,54-56H,11-12,14-15H2,1-8H3/t20-,21+,24+,26+,27+,39-,40-,42-,43-,44-/m1/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C44H48O18 |
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| Average Mass | 864.8500 Da |
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| Monoisotopic Mass | 864.28406 Da |
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| IUPAC Name | (2S,3R,4R,6S)-6-{[(2R,3S,6S)-6-{[(1S,4aS,12aR)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,2,4a,5,7,10,12,12a-octahydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate |
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| Traditional Name | (2S,3R,4R,6S)-6-{[(2R,3S,6S)-6-{[(1S,4aS,12aR)-3-acetyl-4,4a,6,12a-tetrahydroxy-9-methoxy-11-methyl-2,5,7,10-tetraoxo-1,12-dihydrotetracen-1-yl]oxy}-2-methyloxan-3-yl]oxy}-4-hydroxy-2,4-dimethyloxan-3-yl 2-hydroxy-3,6-dimethylbenzoate |
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| CAS Registry Number | Not Available |
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| SMILES | COC1=CC(=O)C2=C(O)C3=C(C[C@@]4(O)[C@H](O[C@H]5CC[C@H](O[C@H]6C[C@@](C)(O)[C@H](OC(=O)C7=C(C)C=CC(C)=C7O)[C@H](C)O6)[C@@H](C)O5)C(=O)C(C(C)=O)=C(O)[C@@]4(O)C3=O)C(C)=C2C1=O |
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| InChI Identifier | InChI=1S/C44H48O18/c1-16-9-10-17(2)33(47)28(16)41(53)62-39-21(6)59-27(15-42(39,7)54)60-24-11-12-26(58-20(24)5)61-40-36(50)30(19(4)45)37(51)44(56)38(52)31-22(14-43(40,44)55)18(3)29-32(35(31)49)23(46)13-25(57-8)34(29)48/h9-10,13,20-21,24,26-27,39-40,47,49,51,54-56H,11-12,14-15H2,1-8H3/t20-,21+,24+,26+,27+,39-,40-,42-,43-,44-/m1/s1 |
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| InChI Key | IFCBPTPGDINHLK-VSYKUZCLSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| Not Available | | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as anthraquinone glycosides. These are organic compounds containing an anthraquinone moiety glycosidically bound to a carbohydrate moiety. |
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| Kingdom | Organic compounds |
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| Super Class | Benzenoids |
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| Class | Anthracenes |
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| Sub Class | Anthraquinones |
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| Direct Parent | Anthraquinone glycosides |
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| Alternative Parents | |
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| Substituents | - Anthraquinone glycoside
- O-hydroxybenzoic acid ester
- O-glycosyl compound
- Glycosyl compound
- Disaccharide
- Naphthalene
- Salicylic acid or derivatives
- Tetralin
- Benzoate ester
- P-xylenol
- Xylenol
- Benzoic acid or derivatives
- M-cresol
- O-cresol
- Quinone
- P-xylene
- Xylene
- Benzoyl
- Aryl ketone
- Aryl alkyl ketone
- Phenol
- Cyclohexenone
- 1-hydroxy-4-unsubstituted benzenoid
- Monocyclic benzene moiety
- Oxane
- Tertiary alcohol
- Vinylogous acid
- Vinylogous ester
- Carboxylic acid ester
- Cyclic ketone
- Ketone
- Polyol
- Enol
- Acetal
- Carboxylic acid derivative
- Organoheterocyclic compound
- Oxacycle
- Monocarboxylic acid or derivatives
- Alcohol
- Carbonyl group
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Aldehyde
- Organooxygen compound
- Aromatic heteropolycyclic compound
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| Molecular Framework | Aromatic heteropolycyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Khatri I, Subramanian S, Mayilraj S: Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T). Genom Data. 2014 Mar 12;2:44-5. doi: 10.1016/j.gdata.2013.12.003. eCollection 2014 Dec. [PubMed:26484067 ]
- Guo X, Crnovcic I, Chang CY, Luo J, Lohman JR, Papinski M, Bechthold A, Horsman GP, Shen B: PokMT1 from the Polyketomycin Biosynthetic Machinery of Streptomyces diastatochromogenes Tu6028 Belongs to the Emerging Family of C-Methyltransferases That Act on CoA-Activated Aromatic Substrates. Biochemistry. 2018 Feb 13;57(6):1003-1011. doi: 10.1021/acs.biochem.7b01219. Epub 2018 Jan 30. [PubMed:29341603 ]
- Greule A, Marolt M, Deubel D, Peintner I, Zhang S, Jessen-Trefzer C, De Ford C, Burschel S, Li SM, Friedrich T, Merfort I, Ludeke S, Bisel P, Muller M, Paululat T, Bechthold A: Wide Distribution of Foxicin Biosynthetic Gene Clusters in Streptomyces Strains - An Unusual Secondary Metabolite with Various Properties. Front Microbiol. 2017 Feb 21;8:221. doi: 10.3389/fmicb.2017.00221. eCollection 2017. [PubMed:28270798 ]
- Greule A, Zhang S, Paululat T, Bechthold A: From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tu6028. J Vis Exp. 2017 Jan 13;(119):54952. doi: 10.3791/54952. [PubMed:28117820 ]
- Daum M, Peintner I, Linnenbrink A, Frerich A, Weber M, Paululat T, Bechthold A: Organisation of the biosynthetic gene cluster and tailoring enzymes in the biosynthesis of the tetracyclic quinone glycoside antibiotic polyketomycin. Chembiochem. 2009 Apr 17;10(6):1073-83. doi: 10.1002/cbic.200800823. [PubMed:19266534 ]
- LOTUS database [Link]
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