NP-MRD: Showing NP-Card for [(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate (NP0219741)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 20:50:28 UTC

Updated at

2022-09-05 20:50:28 UTC

NP-MRD ID

NP0219741

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate

Description

(1R)-2alpha-(Acetoxymethyl)-3alpha-[(1R)-2alpha-methyl-5-oxo-3-cyclopentene-1beta-yl]-4alpha-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1beta-cyclopentanol acetate belongs to the class of organic compounds known as spatane and 4,10-secospatane diterpenoids. These are diterpenoids with a structure based on the spatane or 4,10-secospatane skeleton. The spatane skeleton is formally derived from a prenylgermacrane by 1,5- and 6,10-cyclisation. [(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate is found in Rugulopteryx okamurae. Based on a literature review very few articles have been published on (1R)-2alpha-(Acetoxymethyl)-3alpha-[(1R)-2alpha-methyl-5-oxo-3-cyclopentene-1beta-yl]-4alpha-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1beta-cyclopentanol acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052222502D          

 29 30  0  0  1  0            999 V2000
    1.2564    1.4698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5420    1.0573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1725    1.4698    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5420    0.2323    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2564   -0.1802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2564   -1.0052    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9239   -1.4901    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7085   -1.2352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8800   -0.4282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2669    0.1238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6646   -0.1733    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6689   -2.2748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8439   -2.2748    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3590   -2.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4615   -2.8560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6946   -3.6959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5150   -3.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8506   -4.5358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3657   -5.2032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7012   -5.9569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5452   -5.1170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5890   -1.4901    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1956   -1.2352    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8631   -1.7201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8631   -2.5451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5305   -1.2352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2756   -0.4506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4506   -0.4506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0343    0.2169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 13 22  1  0  0  0  0
  6 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  6  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END

     RDKit          3D

 63 64  0  0  0  0  0  0  0  0999 V2000
   -5.1256    2.3573    3.5267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7996    1.9215    2.9408 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8466    2.7220    2.9985 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6261    0.7112    2.3682 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5937    0.0643    1.7570 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1054    0.4477    0.4374 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4270    1.7751    0.2734 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3130    2.0402   -1.1305 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8111    3.1840   -1.7161 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6519    3.3786   -3.1644 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3834    4.0057   -0.9527 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0546    1.5489    0.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3311    0.2055    0.2231 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2983   -0.4010    1.1143 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0579   -0.7106    2.5591 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4879   -0.7156    0.6316 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0230   -0.5501   -0.7172 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2063    0.3637   -0.7191 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3913   -0.0435   -1.1406 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6363   -1.4235   -1.6388 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5163    0.9269   -1.1103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9412   -0.4316   -0.0489 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1430   -1.8734    0.1847 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1672   -2.6379   -0.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8334   -3.3036   -0.3331 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6519   -2.4429   -2.0039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9528   -2.2230   -1.9795 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4216   -2.2599   -0.5783 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7045   -3.6989   -0.2107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8380    1.5156    3.4042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0282    2.5332    4.6196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4505    3.2673    2.9904 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7329   -1.0547    1.8752 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6901    0.2121    2.4722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9659    0.4223   -0.2766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9349    2.5911    0.6981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7423    2.4470   -3.7472 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7080    3.8930   -3.4425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4801    4.0448   -3.5336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1949    1.4814    1.9501 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6950    2.2706    0.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8465    0.4472   -0.7558 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0392   -0.8829    3.0964 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6000    0.0878    3.1322 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5513   -1.6967    2.6460 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2145   -1.1811    1.3463 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3763   -0.2987   -1.5316 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4542   -1.5752   -0.9930 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0575    1.3864   -0.3581 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8938   -1.6999   -2.4312 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6264   -2.1692   -0.8022 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6276   -1.5197   -2.1244 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0639    0.8905   -0.1410 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1874    0.6639   -1.9635 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0914    1.9607   -1.2618 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0906   -0.3518   -1.1835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2558   -2.2385    1.1880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0853   -2.4629   -2.9414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5836   -2.0414   -2.8666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2589   -1.5918   -0.3804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0546   -4.2649   -1.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7874   -4.2311    0.1338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5048   -3.7918    0.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
 29 28  1  0
 28 27  1  0
 27 26  2  0
 26 24  1  0
 24 25  2  0
 24 23  1  0
 23 22  1  0
 22  6  1  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
  6  7  1  0
  7 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  0
 18 19  2  3
 19 20  1  0
 19 21  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 23 28  1  0
 13 22  1  0
 29 61  1  0
 29 62  1  0
 29 63  1  0
 28 60  1  6
 27 59  1  0
 26 58  1  0
 23 57  1  1
 22 56  1  6
  6 35  1  6
  5 33  1  0
  5 34  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  7 36  1  1
 12 40  1  0
 12 41  1  0
 13 42  1  6
 15 43  1  0
 15 44  1  0
 15 45  1  0
 16 46  1  0
 17 47  1  0
 17 48  1  0
 18 49  1  0
 20 50  1  0
 20 51  1  0
 20 52  1  0
 21 53  1  0
 21 54  1  0
 21 55  1  0
 10 37  1  0
 10 38  1  0
 10 39  1  0
M  END


  Mrv1652309052222502D          

 29 30  0  0  1  0            999 V2000
    1.2564    1.4698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5420    1.0573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1725    1.4698    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5420    0.2323    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2564   -0.1802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2564   -1.0052    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9239   -1.4901    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7085   -1.2352    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8800   -0.4282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2669    0.1238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6646   -0.1733    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6689   -2.2748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8439   -2.2748    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3590   -2.9422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4615   -2.8560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6946   -3.6959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5150   -3.7821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8506   -4.5358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3657   -5.2032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7012   -5.9569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5452   -5.1170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5890   -1.4901    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.1956   -1.2352    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8631   -1.7201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8631   -2.5451    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5305   -1.2352    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2756   -0.4506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4506   -0.4506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0343    0.2169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  2  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 13 22  1  0  0  0  0
  6 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  6  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0219741

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C=CC(=O)[C@H]1[C@H]1[C@@H](COC(C)=O)[C@@H](C[C@H]1\C(C)=C/CC=C(C)C)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C24H34O5/c1-14(2)8-7-9-15(3)19-12-22(29-18(6)26)20(13-28-17(5)25)24(19)23-16(4)10-11-21(23)27/h8-11,16,19-20,22-24H,7,12-13H2,1-6H3/b15-9-/t16-,19+,20+,22-,23+,24-/m1/s1

> <INCHI_KEY>
HFGVWWLMUPWMCM-DCXMRNKQSA-N

> <FORMULA>
C24H34O5

> <MOLECULAR_WEIGHT>
402.531

> <EXACT_MASS>
402.240624195

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
45.28281578424061

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,2R,3R,5R)-5-(acetyloxy)-2-[(1R,2R)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2Z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate

> <JCHEM_LOGP>
3.7665785343333322

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
17.4604179556939

> <JCHEM_PKA_STRONGEST_BASIC>
-4.90451430201773

> <JCHEM_POLAR_SURFACE_AREA>
69.67

> <JCHEM_REFRACTIVITY>
115.03699999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,2R,3R,5R)-5-(acetyloxy)-2-[(1R,2R)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2Z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       2.345   2.744   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.012   1.974   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.322   2.744   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       1.012   0.434   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.345  -0.336   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.345  -1.876   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.591  -2.782   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.056  -2.306   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       5.376  -0.799   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.232   0.231   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.841  -0.323   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.115  -4.246   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.575  -4.246   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.670  -5.492   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.861  -5.331   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.297  -6.899   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.828  -7.060   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.454  -8.467   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.549  -9.713   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.176 -11.120   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.018  -9.552   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.099  -2.782   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.365  -2.306   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.611  -3.211   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -1.611  -4.751   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -2.857  -2.306   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.381  -0.841   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.841  -0.841   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.064   0.405   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   22                                                  
CONECT    7    6    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    7   13                                                       
CONECT   13   12   14   22                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   13    6   23                                                  
CONECT   23   22   24   28                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   60    0
END

View in JSmol

Synonyms

Value	Source
(1R)-2a-(Acetoxymethyl)-3a-[(1R)-2a-methyl-5-oxo-3-cyclopentene-1b-yl]-4a-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1b-cyclopentanol acetate	Generator
(1R)-2a-(Acetoxymethyl)-3a-[(1R)-2a-methyl-5-oxo-3-cyclopentene-1b-yl]-4a-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1b-cyclopentanol acetic acid	Generator
(1R)-2alpha-(Acetoxymethyl)-3alpha-[(1R)-2alpha-methyl-5-oxo-3-cyclopentene-1beta-yl]-4alpha-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1beta-cyclopentanol acetic acid	Generator
(1R)-2Α-(acetoxymethyl)-3α-[(1R)-2α-methyl-5-oxo-3-cyclopentene-1β-yl]-4α-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1β-cyclopentanol acetate	Generator
(1R)-2Α-(acetoxymethyl)-3α-[(1R)-2α-methyl-5-oxo-3-cyclopentene-1β-yl]-4α-[(1Z)-1,5-dimethyl-1,4-hexadienyl]-1β-cyclopentanol acetic acid	Generator

Chemical Formula

C₂₄H₃₄O₅

Average Mass

402.5310 Da

Monoisotopic Mass

402.24062 Da

IUPAC Name

[(1S,2R,3R,5R)-5-(acetyloxy)-2-[(1R,2R)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2Z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate

Traditional Name

[(1S,2R,3R,5R)-5-(acetyloxy)-2-[(1R,2R)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2Z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1C=CC(=O)[C@H]1[C@H]1[C@@H](COC(C)=O)[C@@H](C[C@H]1\C(C)=C/CC=C(C)C)OC(C)=O

InChI Identifier

InChI=1S/C24H34O5/c1-14(2)8-7-9-15(3)19-12-22(29-18(6)26)20(13-28-17(5)25)24(19)23-16(4)10-11-21(23)27/h8-11,16,19-20,22-24H,7,12-13H2,1-6H3/b15-9-/t16-,19+,20+,22-,23+,24-/m1/s1

InChI Key

HFGVWWLMUPWMCM-DCXMRNKQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Rugulopteryx okamurae	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as spatane and 4,10-secospatane diterpenoids. These are diterpenoids with a structure based on the spatane or 4,10-secospatane skeleton. The spatane skeleton is formally derived from a prenylgermacrane by 1,5- and 6,10-cyclisation.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Spatane and 4,10-secospatane diterpenoids

Alternative Parents

Substituents

4,10-secospatane diterpenoid
Dicarboxylic acid or derivatives
Cyclic ketone
Ketone
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.77	ChemAxon
pKa (Strongest Acidic)	17.46	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	69.67 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	115.04 m³·mol⁻¹	ChemAxon
Polarizability	45.28 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10471849

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14264068

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate (NP0219741)

MOL for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

3D MOL for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

3D SDF for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

3D-SDF for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

PDB for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

3D PDB for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

SMILES for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

INCHI for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

Structure for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)

3D Structure for NP0219741 ([(1s,2r,3r,5r)-5-(acetyloxy)-2-[(1r,2r)-2-methyl-5-oxocyclopent-3-en-1-yl]-3-[(2z)-6-methylhepta-2,5-dien-2-yl]cyclopentyl]methyl acetate)