NP-MRD: Showing NP-Card for 2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid (NP0219661)

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Record Information

Version

2.0

Created at

2022-09-05 20:43:54 UTC

Updated at

2022-09-05 20:43:55 UTC

NP-MRD ID

NP0219661

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid

Description

2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]Decan-8-ylidene]propanoic acid belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. 2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid is found in Lindera aggregata. Based on a literature review very few articles have been published on 2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]Decan-8-ylidene]propanoic acid.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309052222432D          

 20 22  0  0  1  0            999 V2000
   -1.4655    0.5217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8697   -0.0489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0659   -0.8502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8580   -1.0809    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4701   -1.4208    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0776    0.1818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1186    0.9831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4772    1.5537    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9107    1.2138    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5066    0.6432    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7855    1.4196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3293    0.7042    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1467    0.5928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6415   -0.0595    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0118   -0.5924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6076   -1.1630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5066   -1.2446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3103   -0.1581    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5182   -0.3888    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3220   -1.1901    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  2  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 18 15  1  1  0  0  0
 10 18  1  0  0  0  0
 18 19  1  0  0  0  0
  6 19  1  0  0  0  0
 19 20  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0219661

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(C(O)=O)=C1\[C@@H](O)[C@@H]2C(C)(C)[C@@H]3C[C@@H]3[C@]2(C)OC1=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H20O5/c1-6(12(17)18)9-10(16)11-14(2,3)7-5-8(7)15(11,4)20-13(9)19/h7-8,10-11,16H,5H2,1-4H3,(H,17,18)/b9-6+/t7-,8+,10-,11-,15+/m1/s1

> <INCHI_KEY>
BJMXIQDWPYIHIE-XDHOZZIBSA-N

> <FORMULA>
C15H20O5

> <MOLECULAR_WEIGHT>
280.32

> <EXACT_MASS>
280.131073744

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
28.26482857476782

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

> <JCHEM_LOGP>
1.3628800616666674

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.94853274714935

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.5958409079788756

> <JCHEM_PKA_STRONGEST_BASIC>
-3.285128372575671

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
70.2675

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.736   0.974   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.623  -0.091   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.990  -1.587   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.468  -2.018   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0      -0.878  -2.652   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -0.145   0.339   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.221   1.835   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -0.891   2.900   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       1.700   2.266   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       2.812   1.201   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.333   2.650   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.348   1.314   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.874   1.107   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.931  -0.111   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.755  -1.106   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.868  -2.171   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.812  -2.323   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.446  -0.295   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.967  -0.726   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.601  -2.222   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    2    7   19                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12   18                                             
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12   14                                                       
CONECT   14   13   12   15                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15   10   19                                                  
CONECT   19   18    6   20                                                  
CONECT   20   19                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Value	Source
2-[(1S,2S,4R,6S,7S,8E)-7-Hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0,]decan-8-ylidene]propanoate	Generator

Chemical Formula

C₁₅H₂₀O₅

Average Mass

280.3200 Da

Monoisotopic Mass

280.13107 Da

IUPAC Name

2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

Traditional Name

2-[(1S,2S,4R,6S,7S,8E)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0^{2,4}]decan-8-ylidene]propanoic acid

CAS Registry Number

Not Available

SMILES

C\C(C(O)=O)=C1\[C@@H](O)[C@@H]2C(C)(C)[C@@H]3C[C@@H]3[C@]2(C)OC1=O

InChI Identifier

InChI=1S/C15H20O5/c1-6(12(17)18)9-10(16)11-14(2,3)7-5-8(7)15(11,4)20-13(9)19/h7-8,10-11,16H,5H2,1-4H3,(H,17,18)/b9-6+/t7-,8+,10-,11-,15+/m1/s1

InChI Key

BJMXIQDWPYIHIE-XDHOZZIBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lindera aggregata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Monoterpenoid
Delta_valerolactone
Delta valerolactone
Oxane
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.36	ChemAxon
pKa (Strongest Acidic)	3.6	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	70.27 m³·mol⁻¹	ChemAxon
Polarizability	28.26 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162847812

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid (NP0219661)

MOL for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

3D MOL for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

3D SDF for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

3D-SDF for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

PDB for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

3D PDB for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

SMILES for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

INCHI for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

Structure for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)

3D Structure for NP0219661 (2-[(1s,2s,4r,6s,7s,8e)-7-hydroxy-1,5,5-trimethyl-9-oxo-10-oxatricyclo[4.4.0.0²,⁴]decan-8-ylidene]propanoic acid)