NP-MRD: Showing NP-Card for 3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one (NP0219377)

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Record Information

Version

1.0

Created at

2022-09-05 20:20:48 UTC

Updated at

2022-09-05 20:20:48 UTC

NP-MRD ID

NP0219377

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one

Description

Nordavanone belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms. It was first documented in 2022 (PMID: 36075691). Based on a literature review a significant number of articles have been published on Nordavanone (PMID: 36075690) (PMID: 36075689) (PMID: 36075688) (PMID: 36075687).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 31  0  0  0  0  0  0  0  0999 V2000
   -3.9839   -0.6776   -0.8030 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9477    0.0565   -1.1815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8082    0.2921   -0.2670 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1204    1.4861    0.6133 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6430   -0.9732    0.5690 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1952   -0.8824    0.9670 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3313    0.1978    0.0788 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7008   -0.1153   -0.4428 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2114    0.9921   -1.3384 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6468   -0.2748    0.6781 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0802   -0.6272    0.4922 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2619   -0.1158    1.8197 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5981    0.4145   -0.9106 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0496   -1.1377    0.1835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8096   -0.8449   -1.4740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9440    0.4822   -2.1678 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1954    1.7650    0.5732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5340    2.3817    0.3321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8615    1.2310    1.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8232   -1.8771   -0.0373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3295   -0.9765    1.4359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0938   -0.6340    2.0454 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3230   -1.8564    0.8139 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4008    1.1268    0.6823 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6562   -1.0333   -1.0743 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8565    1.6574   -0.7467 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7615    0.5888   -2.2227 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3278    1.5579   -1.7159 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2799   -0.9552   -0.5536 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7380    0.2264    0.7429 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3609   -1.4748    1.1803 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3 13  1  0
  3  2  1  6
  2  1  2  3
  8 10  1  0
 10 11  1  0
 10 12  2  0
 13  7  1  0
  9 26  1  0
  9 27  1  0
  9 28  1  0
  8 25  1  6
  7 24  1  1
  6 22  1  0
  6 23  1  0
  5 20  1  0
  5 21  1  0
  4 17  1  0
  4 18  1  0
  4 19  1  0
  2 16  1  0
  1 14  1  0
  1 15  1  0
 11 29  1  0
 11 30  1  0
 11 31  1  0
M  END

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.614   4.689   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.090   3.224   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.029   3.224   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.306   1.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.615  -1.536   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.011  -2.943   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.147  -1.375   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -3.052  -2.621   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -2.773   0.032   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      -0.186   1.175   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   13                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   13                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    7    3                                                       
MASTER        0    0    0    0    0    0    0    0   13    0   26    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₈O₂

Average Mass

182.2630 Da

Monoisotopic Mass

182.13068 Da

IUPAC Name

3-[(2S,5R)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one

Traditional Name

3-[(2S,5R)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one

CAS Registry Number

Not Available

SMILES

CC([C@@H]1CC[C@@](C)(O1)C=C)C(C)=O

InChI Identifier

InChI=1S/C11H18O2/c1-5-11(4)7-6-10(13-11)8(2)9(3)12/h5,8,10H,1,6-7H2,2-4H3/t8?,10-,11-/m0/s1

InChI Key

RNEVZQGFNUZDJC-CSUXEGHOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Oxolanes

Sub Class

Not Available

Direct Parent

Oxolanes

Alternative Parents

Substituents

Oxolane
Ketone
Oxacycle
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.25	ChemAxon
pKa (Strongest Acidic)	19.06	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	52.6 m³·mol⁻¹	ChemAxon
Polarizability	20.75 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011495

Chemspider ID

4936795

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6431481

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Abioye AI, Sudfeld CR, Hughes MD, Aboud S, Muhihi A, Ulenga N, Nagu TJ, Wang M, Mugusi F, Fawzi WW: Iron status among HIV-infected adults during the first year of antiretroviral therapy in Tanzania. HIV Med. 2022 Sep 8. doi: 10.1111/hiv.13396. [PubMed:36075691 ]
Authors unspecified: Resources Round-up. Altern Lab Anim. 2022 Sep 8:2611929221121256. doi: 10.1177/02611929221121256. [PubMed:36075690 ]
Kim JU, Khan W, Arowoshola L, Ahmad M: Correspondence. Eur Heart J Qual Care Clin Outcomes. 2022 Aug 26. pii: 6677390. doi: 10.1093/ehjqcco/qcac051. [PubMed:36075689 ]
DaVault L: Field Amputations Facilitated by a Surgical Extraction Team. Am Surg. 2022 Sep 8:31348221114521. doi: 10.1177/00031348221114521. [PubMed:36075688 ]
Szanyi J, Walles JK, Tesfaye F, Gudeta AN, Bjorkman P: Intrauterine HIV exposure is associated with linear growth restriction among Ethiopian children in the first 18 months of life. Trop Med Int Health. 2022 Sep;27(9):823-830. doi: 10.1111/tmi.13805. Epub 2022 Aug 17. [PubMed:36075687 ]
LOTUS database [Link]

Showing NP-Card for 3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one (NP0219377)

MOL for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

3D MOL for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

3D SDF for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

3D-SDF for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

PDB for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

3D PDB for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

SMILES for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

INCHI for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

Structure for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)

3D Structure for NP0219377 (3-[(2s,5r)-5-ethenyl-5-methyloxolan-2-yl]butan-2-one)