NP-MRD: Showing NP-Card for 5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one (NP0219344)

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Record Information

Version

2.0

Created at

2022-09-05 20:18:21 UTC

Updated at

2022-09-05 20:18:21 UTC

NP-MRD ID

NP0219344

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one

Description

5,7-Dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one belongs to the class of organic compounds known as 6-prenylated flavanones. These are flavanones that features a C5-isoprenoid substituent at the 6-position. 5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one is found in Paulownia tomentosa. 5,7-Dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231514492D          

 33 35  0  0  0  0            999 V2000
  -11.4315    6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1460    5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.8592    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447    4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.2868    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.2881    2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1533004231514492D          

 33 35  0  0  0  0            999 V2000
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  -10.7171    6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0219344

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=CC=C1O)C1CC(=O)C2=C(O)C(CC=C(C)CCC(O)C(C)=C)=C(O)C=C2O1

> <INCHI_IDENTIFIER>
InChI=1S/C26H30O7/c1-14(2)18(27)9-6-15(3)5-8-17-20(29)12-24-25(26(17)31)21(30)13-22(33-24)16-7-10-19(28)23(11-16)32-4/h5,7,10-12,18,22,27-29,31H,1,6,8-9,13H2,2-4H3

> <INCHI_KEY>
JDLZAZIAVULNSS-UHFFFAOYSA-N

> <FORMULA>
C26H30O7

> <MOLECULAR_WEIGHT>
454.519

> <EXACT_MASS>
454.199153306

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
49.31114148957833

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one

> <ALOGPS_LOGP>
3.44

> <JCHEM_LOGP>
4.892840662333334

> <ALOGPS_LOGS>
-4.54

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.22950832596576

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.678848688414118

> <JCHEM_PKA_STRONGEST_BASIC>
-1.4430370788358036

> <JCHEM_POLAR_SURFACE_AREA>
116.45000000000002

> <JCHEM_REFRACTIVITY>
126.2414

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.32e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0     -21.339  12.320   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0     -20.005  11.550   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0     -20.005  10.010   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -18.672   9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -18.672   7.700   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -20.005   6.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -21.339   7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -21.339   9.240   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0     -22.673  10.010   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0     -17.338   6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -16.004   7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -14.670   6.930   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0     -13.337   7.700   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0     -14.670   5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -13.337   4.620   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0     -12.003   5.390   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0     -13.337   3.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0     -12.003   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -10.669   3.080   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -9.336   2.310   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.336   0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -8.002   3.080   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -6.668   2.310   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -5.335   3.080   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -5.335   4.620   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -2.667   3.080   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -4.001   0.770   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -14.670   2.310   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0     -14.670   0.770   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0     -16.004   3.080   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0     -16.004   4.620   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0     -17.338   5.390   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    3    9                                                  
CONECT    9    8                                                            
CONECT   10    5   11   33                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   32                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   29                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26                                                            
CONECT   29   17   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   14   33                                                  
CONECT   33   32   10                                                       
MASTER        0    0    0    0    0    0    0    0   33    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₀O₇

Average Mass

454.5190 Da

Monoisotopic Mass

454.19915 Da

IUPAC Name

5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one

Traditional Name

5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one

CAS Registry Number

Not Available

SMILES

COC1=CC(=CC=C1O)C1CC(=O)C2=C(O)C(CC=C(C)CCC(O)C(C)=C)=C(O)C=C2O1

InChI Identifier

InChI=1S/C26H30O7/c1-14(2)18(27)9-6-15(3)5-8-17-20(29)12-24-25(26(17)31)21(30)13-22(33-24)16-7-10-19(28)23(11-16)32-4/h5,7,10-12,18,22,27-29,31H,1,6,8-9,13H2,2-4H3

InChI Key

JDLZAZIAVULNSS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Paulownia tomentosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 6-prenylated flavanones. These are flavanones that features a C5-isoprenoid substituent at the 6-position.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavans

Direct Parent

6-prenylated flavanones

Alternative Parents

Substituents

6-prenylated flavanone
3p-methoxyflavonoid-skeleton
4'-hydroxyflavonoid
5-hydroxyflavonoid
7-hydroxyflavonoid
Flavanone
Hydroxyflavonoid
Chromone
Chromane
Benzopyran
Methoxyphenol
1-benzopyran
Fatty alcohol
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
Aryl alkyl ketone
Aryl ketone
Alkyl aryl ether
Phenol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Fatty acyl
Monocyclic benzene moiety
Benzenoid
Vinylogous acid
Secondary alcohol
Ketone
Ether
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Alcohol
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.44	ALOGPS
logP	4.89	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	7.68	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	116.45 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	126.24 m³·mol⁻¹	ChemAxon
Polarizability	49.31 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74336576

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one (NP0219344)

MOL for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

3D MOL for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

3D SDF for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

3D-SDF for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

PDB for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

3D PDB for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

SMILES for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

INCHI for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

Structure for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)

3D Structure for NP0219344 (5,7-dihydroxy-6-(6-hydroxy-3,7-dimethylocta-2,7-dien-1-yl)-2-(4-hydroxy-3-methoxyphenyl)-2,3-dihydro-1-benzopyran-4-one)