NP-MRD: Showing NP-Card for (1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one (NP0219321)

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Record Information

Version

2.0

Created at

2022-09-05 20:16:39 UTC

Updated at

2022-09-05 20:16:39 UTC

NP-MRD ID

NP0219321

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one

Description

Schinol belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one is found in Amphipterygium adstringens. (1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one was first documented in 2010 (PMID: 20939907). Based on a literature review a small amount of articles have been published on Schinol (PMID: 33818669) (PMID: 28669243).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052222162D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309052222162D          

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    5.5171   -2.2259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7686   -3.6325    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  7  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 14 12  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 18 17  1  1  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 14 28  1  0  0  0  0
 28 29  1  1  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
  9 32  1  0  0  0  0
 12 32  1  0  0  0  0
 32 33  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0219321

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C(/C)CC[C@@H](C)[C@H]1CC[C@@]2(C)[C@@H]3[C@@H](O)C[C@H]4C(C)(C)C(O)CC[C@]4(C)[C@H]3C(=O)C[C@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O3/c1-9-18(2)10-11-19(3)20-12-15-29(7)26-21(31)16-23-27(4,5)24(33)13-14-28(23,6)25(26)22(32)17-30(20,29)8/h9,19-21,23-26,31,33H,10-17H2,1-8H3/b18-9+/t19-,20-,21+,23+,24?,25+,26-,28+,29+,30-/m1/s1

> <INCHI_KEY>
XTEIBUIGGLPXHO-OAQULQKXSA-N

> <FORMULA>
C30H50O3

> <MOLECULAR_WEIGHT>
458.727

> <EXACT_MASS>
458.37599547

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
83

> <JCHEM_AVERAGE_POLARIZABILITY>
55.90442514049555

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,7R,9S,10R,11S,14R,15R)-5,9-dihydroxy-2,6,6,11,15-pentamethyl-14-[(2R,5E)-5-methylhept-5-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-17-one

> <JCHEM_LOGP>
5.923894486666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.48936243459929

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.895883672769514

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8351527630269514

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
136.22109999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,7R,9S,10R,11S,14R,15R)-5,9-dihydroxy-2,6,6,11,15-pentamethyl-14-[(2R,5E)-5-methylhept-5-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-17-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.320  -5.020   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.206  -5.231   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.786  -6.657   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.159  -7.873   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.312  -6.868   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.257  -5.652   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.782  -5.863   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.363  -7.289   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.159  -1.754   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.836  -0.352   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.323  -0.719   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.185  -1.391   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      16.362  -3.071   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.291  -5.332   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      10.768  -6.781   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   32                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   32                                             
CONECT   13   12                                                            
CONECT   14   12   15   28                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   26                                                  
CONECT   19   18   20   21   22                                             
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   19   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   18   27   28                                             
CONECT   27   26                                                            
CONECT   28   26   14   29                                                  
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31    9   12   33                                             
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Value	Source
Masticadienolic acid	MeSH

Chemical Formula

C₃₀H₅₀O₃

Average Mass

458.7270 Da

Monoisotopic Mass

458.37600 Da

IUPAC Name

(1S,2S,7R,9S,10R,11S,14R,15R)-5,9-dihydroxy-2,6,6,11,15-pentamethyl-14-[(2R,5E)-5-methylhept-5-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-17-one

Traditional Name

(1S,2S,7R,9S,10R,11S,14R,15R)-5,9-dihydroxy-2,6,6,11,15-pentamethyl-14-[(2R,5E)-5-methylhept-5-en-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-17-one

CAS Registry Number

Not Available

SMILES

C\C=C(/C)CC[C@@H](C)[C@H]1CC[C@@]2(C)[C@@H]3[C@@H](O)C[C@H]4C(C)(C)C(O)CC[C@]4(C)[C@H]3C(=O)C[C@]12C

InChI Identifier

InChI=1S/C30H50O3/c1-9-18(2)10-11-19(3)20-12-15-29(7)26-21(31)16-23-27(4,5)24(33)13-14-28(23,6)25(26)22(32)17-30(20,29)8/h9,19-21,23-26,31,33H,10-17H2,1-8H3/b18-9+/t19-,20-,21+,23+,24?,25+,26-,28+,29+,30-/m1/s1

InChI Key

XTEIBUIGGLPXHO-OAQULQKXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Amphipterygium adstringens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Cholane-skeleton
14-alpha-methylsteroid
7-hydroxysteroid
7-alpha-hydroxysteroid
Oxosteroid
11-oxosteroid
Hydroxysteroid
3-hydroxysteroid
Steroid
Cyclic alcohol
Secondary alcohol
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.92	ChemAxon
pKa (Strongest Acidic)	14.9	ChemAxon
pKa (Strongest Basic)	-0.84	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	136.22 m³·mol⁻¹	ChemAxon
Polarizability	55.9 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101285951

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Damayanti S, Fabelle NR, Yooin W, Insanu M, Jiranusornkul S, Wongrattanakamon P: Molecular modeling for potential cathepsin L inhibitor identification as new anti-photoaging agents from tropical medicinal plants. J Bioenerg Biomembr. 2021 Jun;53(3):259-274. doi: 10.1007/s10863-021-09893-5. Epub 2021 Apr 5. [PubMed:33818669 ]
da Silva JHS, Simas NK, Alviano CS, Alviano DS, Ventura JA, de Lima EJ, Seabra SH, Kuster RM: Anti-Escherichia coli activity of extracts from Schinus terebinthifolius fruits and leaves. Nat Prod Res. 2018 Jun;32(11):1365-1368. doi: 10.1080/14786419.2017.1344657. Epub 2017 Jul 3. [PubMed:28669243 ]
Johann S, Sa NP, Lima LA, Cisalpino PS, Cota BB, Alves TM, Siqueira EP, Zani CL: Antifungal activity of schinol and a new biphenyl compound isolated from Schinus terebinthifolius against the pathogenic fungus Paracoccidioides brasiliensis. Ann Clin Microbiol Antimicrob. 2010 Oct 12;9:30. doi: 10.1186/1476-0711-9-30. [PubMed:20939907 ]
LOTUS database [Link]

Showing NP-Card for (1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one (NP0219321)

MOL for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

3D MOL for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

3D SDF for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

3D-SDF for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

PDB for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

3D PDB for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

SMILES for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

INCHI for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

Structure for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)

3D Structure for NP0219321 ((1r,3as,3br,4s,5ar,9as,9bs,11ar)-4,7-dihydroxy-3a,6,6,9a,11a-pentamethyl-1-[(2r,5e)-5-methylhept-5-en-2-yl]-dodecahydrocyclopenta[a]phenanthren-10-one)