NP-MRD: Showing NP-Card for (1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate (NP0219019)

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Record Information

Version

2.0

Created at

2022-09-05 19:52:35 UTC

Updated at

2022-09-05 19:52:35 UTC

NP-MRD ID

NP0219019

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate

Description

(1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]Octan-3-yl (2S)-2-methylbutanoate belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]Octane. (1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate is found in Duboisia leichhardtii. Based on a literature review very few articles have been published on (1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]Octan-3-yl (2S)-2-methylbutanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
    5.3610    0.1028    0.3779 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0700    0.1607    1.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8650    0.0302    0.2250 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8473    1.1458   -0.7886 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6016    0.0024    0.9908 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5622    0.0806    2.2532 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3951   -0.1128    0.3333 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8595   -0.1472    0.9895 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5545   -1.4406    0.7851 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7038   -1.4027   -0.1611 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1496   -1.0823   -1.5462 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2329    0.4123   -1.6654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7770    0.8337   -0.3145 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6215    1.0686    0.6046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5968   -0.2883    0.0503 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1076   -0.2121    1.3947 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3124   -0.5044   -0.5461 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7559    1.1344    0.1642 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1322   -0.3469    1.0615 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9989    1.1243    1.6432 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0438   -0.6906    1.8430 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0103   -0.9230   -0.3544 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8486    1.4124   -1.1529 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4191    2.0694   -0.3073 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2090    0.9070   -1.6642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6240   -0.0625    2.0916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8886   -1.9313    1.7421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8020   -2.1673    0.3602 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2685   -2.3329   -0.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0867   -1.3991   -1.6387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7070   -1.6085   -2.3466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9788    0.6645   -2.4545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2403    0.8775   -1.8667 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3746    1.7482   -0.3919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0181    1.6081    1.5013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9558    1.8249    0.0953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1559   -0.5800    1.3726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1637    0.8555    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5651   -0.8309    2.1163 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
 14  8  1  0
 15 10  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  6
  4 23  1  0
  4 24  1  0
  4 25  1  0
  8 26  1  1
  9 27  1  0
  9 28  1  0
 10 29  1  6
 11 30  1  0
 11 31  1  0
 12 32  1  0
 12 33  1  0
 13 34  1  6
 14 35  1  0
 14 36  1  0
 16 37  1  0
 16 38  1  0
 16 39  1  0
M  END


  Mrv1652309052221522D          

 16 17  0  0  1  0            999 V2000
   -3.5972   -0.2512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8827    0.1613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1682   -0.2512    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1682   -1.0762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4538    0.1613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4538    0.9863    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7393   -0.2512    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0248    0.1613    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6568   -0.3034    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4452   -0.0602    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7466    0.7077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3341    1.4222    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5183    1.5452    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0865    0.9840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1824    0.8583    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8969    1.2708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 14  1  0  0  0  0
 13 15  1  6  0  0  0
 10 15  1  6  0  0  0
 15 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0219019

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H](C)C(=O)O[C@@H]1C[C@@H]2CC[C@H](C1)N2C

> <INCHI_IDENTIFIER>
InChI=1S/C13H23NO2/c1-4-9(2)13(15)16-12-7-10-5-6-11(8-12)14(10)3/h9-12H,4-8H2,1-3H3/t9-,10-,11+,12+/m0/s1

> <INCHI_KEY>
OGQXAZJUVVPCRL-NNYUYHANSA-N

> <FORMULA>
C13H23NO2

> <MOLECULAR_WEIGHT>
225.332

> <EXACT_MASS>
225.172878985

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
25.84759829509635

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-2-methylbutanoate

> <JCHEM_LOGP>
2.162776865666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
9.385562750655216

> <JCHEM_POLAR_SURFACE_AREA>
29.54

> <JCHEM_REFRACTIVITY>
63.54770000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-2-methylbutanoate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.715  -0.469   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -5.381   0.301   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -4.047  -0.469   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.047  -2.009   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.714   0.301   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -2.714   1.841   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      -1.380  -0.469   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.046   0.301   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.226  -0.566   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.698  -0.112   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.260   1.321   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.490   2.655   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.967   2.884   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.161   1.837   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0       2.207   1.602   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       3.541   2.372   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   15                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13    8                                                       
CONECT   15   13   10   16                                                  
CONECT   16   15                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Value	Source
(1R,3S,5S)-8-Methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-2-methylbutanoic acid	Generator

Chemical Formula

C₁₃H₂₃NO₂

Average Mass

225.3320 Da

Monoisotopic Mass

225.17288 Da

IUPAC Name

(1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-2-methylbutanoate

Traditional Name

(1R,3S,5S)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2S)-2-methylbutanoate

CAS Registry Number

Not Available

SMILES

CC[C@H](C)C(=O)O[C@@H]1C[C@@H]2CC[C@H](C1)N2C

InChI Identifier

InChI=1S/C13H23NO2/c1-4-9(2)13(15)16-12-7-10-5-6-11(8-12)14(10)3/h9-12H,4-8H2,1-3H3/t9-,10-,11+,12+/m0/s1

InChI Key

OGQXAZJUVVPCRL-NNYUYHANSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Duboisia leichhardtii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tropane alkaloids. These are organic compounds containing the nitrogenous bicyclic alkaloid parent N-Methyl-8-azabicyclo[3.2.1]Octane.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Tropane alkaloids

Sub Class

Not Available

Direct Parent

Tropane alkaloids

Alternative Parents

Substituents

Tropane alkaloid
Fatty acid ester
Piperidine
N-alkylpyrrolidine
Fatty acyl
Pyrrolidine
Amino acid or derivatives
Carboxylic acid ester
Tertiary amine
Tertiary aliphatic amine
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organoheterocyclic compound
Azacycle
Carbonyl group
Organopnictogen compound
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Organic nitrogen compound
Amine
Organic oxide
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.16	ChemAxon
pKa (Strongest Basic)	9.39	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	29.54 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	63.55 m³·mol⁻¹	ChemAxon
Polarizability	25.85 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

57619340

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate (NP0219019)

MOL for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

3D MOL for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

3D SDF for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

3D-SDF for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

PDB for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

3D PDB for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

SMILES for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

INCHI for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

Structure for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)

3D Structure for NP0219019 ((1r,3s,5s)-8-methyl-8-azabicyclo[3.2.1]octan-3-yl (2s)-2-methylbutanoate)