NP-MRD: Showing NP-Card for (1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol (NP0218918)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 19:44:16 UTC

Updated at

2022-09-05 19:44:17 UTC

NP-MRD ID

NP0218918

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol

Description

Pyxidatol C belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol is found in Artomyces pyxidatus. (1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol was first documented in 2014 (PMID: 24826841). Based on a literature review a small amount of articles have been published on Pyxidatol C (PMID: 27187085) (PMID: 27105390).

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309052221442D          

 17 19  0  0  1  0            999 V2000
    4.0168    3.3319    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4382    2.7438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9936    3.4387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1404    2.3106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2395    1.4916    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.4596    0.6965    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6609    0.9034    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5142    0.0916    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1440   -0.4414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8404    0.9890    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3169    0.3514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5487    0.6522    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5974    1.4758    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7733    1.4382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4739    2.2915    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3957    1.6840    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6618    2.4649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  1  0  0  0
 13 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  1  1  0  0  0
  2 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0218918

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]1(O)CC[C@@H]2[C@@H]1CC(C)(C)C[C@H]1C[C@@]21CO

> <INCHI_IDENTIFIER>
InChI=1S/C15H26O2/c1-13(2)6-10-7-15(10,9-16)11-4-5-14(3,17)12(11)8-13/h10-12,16-17H,4-9H2,1-3H3/t10-,11+,12-,14+,15-/m0/s1

> <INCHI_KEY>
COJSYKXSLPADGO-OEMOEHNSSA-N

> <FORMULA>
C15H26O2

> <MOLECULAR_WEIGHT>
238.371

> <EXACT_MASS>
238.193280077

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
28.26395881362472

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1aS,1bR,4R,4aS,7aS)-1a-(hydroxymethyl)-4,6,6-trimethyl-decahydro-1H-cyclopropa[e]azulen-4-ol

> <JCHEM_LOGP>
1.9107592859999993

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.657802830429542

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.41950757867678

> <JCHEM_PKA_STRONGEST_BASIC>
-0.6517896774620767

> <JCHEM_POLAR_SURFACE_AREA>
40.46

> <JCHEM_REFRACTIVITY>
68.3012

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1aS,1bR,4R,4aS,7aS)-1a-(hydroxymethyl)-4,6,6-trimethyl-octahydrocyclopropa[e]azulen-4-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       7.498   6.220   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.418   5.122   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.588   6.419   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.729   4.313   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.914   2.784   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.325   1.300   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.834   1.686   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.560   0.171   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       7.735  -0.824   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       5.302   1.846   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.325   0.656   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.891   1.218   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.982   2.755   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.443   2.685   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       2.751   4.277   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.472   3.143   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.969   4.601   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   17                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    7                                                       
CONECT    7    6    5    8   10                                             
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7   11   16                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   16                                             
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   13   10   17                                                  
CONECT   17   16    2                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₆O₂

Average Mass

238.3710 Da

Monoisotopic Mass

238.19328 Da

IUPAC Name

(1aS,1bR,4R,4aS,7aS)-1a-(hydroxymethyl)-4,6,6-trimethyl-decahydro-1H-cyclopropa[e]azulen-4-ol

Traditional Name

(1aS,1bR,4R,4aS,7aS)-1a-(hydroxymethyl)-4,6,6-trimethyl-octahydrocyclopropa[e]azulen-4-ol

CAS Registry Number

Not Available

SMILES

C[C@@]1(O)CC[C@@H]2[C@@H]1CC(C)(C)C[C@H]1C[C@@]21CO

InChI Identifier

InChI=1S/C15H26O2/c1-13(2)6-10-7-15(10,9-16)11-4-5-14(3,17)12(11)8-13/h10-12,16-17H,4-9H2,1-3H3/t10-,11+,12-,14+,15-/m0/s1

InChI Key

COJSYKXSLPADGO-OEMOEHNSSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Artomyces pyxidatus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Africanane sesquiterpenoid
Sesquiterpenoid
Tertiary alcohol
Cyclic alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.91	ChemAxon
pKa (Strongest Acidic)	18.42	ChemAxon
pKa (Strongest Basic)	-0.65	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	40.46 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	68.3 m³·mol⁻¹	ChemAxon
Polarizability	28.26 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

75574706

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102027220

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Parthasarathy G, Eggert U, Kalesse M: Correction to Synthesis of Omphadiol and Pyxidatol C. Org Lett. 2016 Jun 3;18(11):2792. doi: 10.1021/acs.orglett.6b01361. Epub 2016 May 17. [PubMed:27187085 ]
Parthasarathy G, Eggert U, Kalesse M: Synthesis of (+)-Omphadiol and (+)-Pyxidatol C. Org Lett. 2016 May 6;18(9):2320-2. doi: 10.1021/acs.orglett.6b00814. Epub 2016 Apr 22. [PubMed:27105390 ]
Zhou L, Yao Y, Xu W, Liang G: Total syntheses of (+/-)-omphadiol and (+/-)-pyxidatol C through a cis-fused 5,7-carbocyclic common intermediate. J Org Chem. 2014 Jun 6;79(11):5345-50. doi: 10.1021/jo5006125. Epub 2014 May 20. [PubMed:24826841 ]
LOTUS database [Link]

Showing NP-Card for (1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol (NP0218918)

MOL for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

3D MOL for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

3D SDF for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

3D-SDF for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

PDB for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

3D PDB for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

SMILES for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

INCHI for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

Structure for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)

3D Structure for NP0218918 ((1as,4as,5r,7ar,7bs)-7b-(hydroxymethyl)-3,3,5-trimethyl-octahydrocyclopropa[e]azulen-5-ol)