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Record Information
Version1.0
Created at2022-09-05 19:30:54 UTC
Updated at2022-09-05 19:30:54 UTC
NP-MRD IDNP0218746
Secondary Accession NumbersNone
Natural Product Identification
Common Name(4e)-n-[1-(4,6-dihydroxy-3,3,5-trimethyl-2-oxocyclohexyl)-1-hydroxy-3-methoxypropan-2-yl]-7-methoxy-9-methylhexadec-4-enimidic acid
DescriptionMalyngamide D belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain. It was first documented in 2010 (PMID: 19839606). Based on a literature review very few articles have been published on Malyngamide D (PMID: 33666690).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC31H57NO7
Average Mass555.7970 Da
Monoisotopic Mass555.41350 Da
IUPAC Name(4E)-N-[1-(4,6-dihydroxy-3,3,5-trimethyl-2-oxocyclohexyl)-1-hydroxy-3-methoxypropan-2-yl]-7-methoxy-9-methylhexadec-4-enimidic acid
Traditional Name(4E)-N-[1-(4,6-dihydroxy-3,3,5-trimethyl-2-oxocyclohexyl)-1-hydroxy-3-methoxypropan-2-yl]-7-methoxy-9-methylhexadec-4-enimidic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCC(C)CC(C\C=C\CCC(O)=NC(COC)C(O)C1C(O)C(C)C(O)C(C)(C)C1=O)OC
InChI Identifier
InChI=1S/C31H57NO7/c1-8-9-10-11-13-16-21(2)19-23(39-7)17-14-12-15-18-25(33)32-24(20-38-6)28(35)26-27(34)22(3)29(36)31(4,5)30(26)37/h12,14,21-24,26-29,34-36H,8-11,13,15-20H2,1-7H3,(H,32,33)/b14-12+
InChI KeyOOOJZFAEKGDVGZ-WYMLVPIESA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentMonocyclic monoterpenoids
Alternative Parents
Substituents
  • Monocyclic monoterpenoid
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Cyclic alcohol
  • Carboxamide group
  • Cyclic ketone
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Ketone
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Organooxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Alcohol
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organopnictogen compound
  • Organonitrogen compound
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.37ChemAxon
pKa (Strongest Acidic)5.82ChemAxon
pKa (Strongest Basic)2.77ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area128.81 ŲChemAxon
Rotatable Bond Count19ChemAxon
Refractivity155.9 m³·mol⁻¹ChemAxon
Polarizability65.81 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10469765
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23424744
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Taniguchi M, Nunnery JK, Engene N, Esquenazi E, Byrum T, Dorrestein PC, Gerwick WH: Palmyramide A, a cyclic depsipeptide from a Palmyra Atoll collection of the marine cyanobacterium Lyngbya majuscula. J Nat Prod. 2010 Mar 26;73(3):393-8. doi: 10.1021/np900428h. [PubMed:19839606 ]
  2. Kum E, Ince E: Genome-guided investigation of secondary metabolites produced by a potential new strain Streptomyces BA2 isolated from an endemic plant rhizosphere in Turkey. Arch Microbiol. 2021 Jul;203(5):2431-2438. doi: 10.1007/s00203-021-02210-z. Epub 2021 Mar 5. [PubMed:33666690 ]
  3. LOTUS database [Link]