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Record Information
Version2.0
Created at2022-09-05 19:19:03 UTC
Updated at2022-09-05 19:19:04 UTC
NP-MRD IDNP0218606
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,3r,5r,6r,8s,9s,10r,11r)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2r)-3-oxopentan-2-yl]-8-[(1s)-1-(3,5,6-trimethyl-4-oxopyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]undecan-4-one
Description(2R,3R,5R,6R,8S,9S,10R,11R)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2R)-3-oxopentan-2-yl]-8-[(1S)-1-(3,5,6-trimethyl-4-oxo-4H-pyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]Undecan-4-one belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone. (2r,3r,5r,6r,8s,9s,10r,11r)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2r)-3-oxopentan-2-yl]-8-[(1s)-1-(3,5,6-trimethyl-4-oxopyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]undecan-4-one is found in Siphonaria atra and Siphonaria zelandica. Based on a literature review very few articles have been published on (2R,3R,5R,6R,8S,9S,10R,11R)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2R)-3-oxopentan-2-yl]-8-[(1S)-1-(3,5,6-trimethyl-4-oxo-4H-pyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]Undecan-4-one.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC28H42O8
Average Mass506.6360 Da
Monoisotopic Mass506.28797 Da
IUPAC Name(2R,3R,5R,6R,8S,9S,10R,11R)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2R)-3-oxopentan-2-yl]-8-[(1S)-1-(3,5,6-trimethyl-4-oxo-4H-pyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]undecan-4-one
Traditional Name(2R,3R,5R,6R,8S,9S,10R,11R)-8,10-dihydroxy-3,5,9,11-tetramethyl-2-[(2R)-3-oxopentan-2-yl]-8-[(1S)-1-(3,5,6-trimethyl-4-oxopyran-2-yl)ethyl]-1,7-dioxaspiro[5.5]undecan-4-one
CAS Registry NumberNot Available
SMILES
CCC(=O)[C@H](C)[C@H]1O[C@]2(O[C@](O)([C@@H](C)C3=C(C)C(=O)C(C)=C(C)O3)[C@@H](C)[C@@H](O)[C@H]2C)[C@H](C)C(=O)[C@@H]1C
InChI Identifier
InChI=1S/C28H42O8/c1-11-21(29)13(3)25-15(5)23(31)17(7)28(35-25)18(8)24(32)16(6)27(33,36-28)19(9)26-14(4)22(30)12(2)20(10)34-26/h13,15-19,24-25,32-33H,11H2,1-10H3/t13-,15-,16-,17+,18+,19-,24+,25+,27-,28-/m0/s1
InChI KeySBRGSDPIGMLXAB-MIKPQFOLSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Siphonaria atraLOTUS Database
Siphonaria zelandicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyranones and derivatives. Pyranones and derivatives are compounds containing a pyran ring which bears a ketone.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassPyrans
Sub ClassPyranones and derivatives
Direct ParentPyranones and derivatives
Alternative Parents
Substituents
  • Ketal
  • Pyranone
  • Oxane
  • Heteroaromatic compound
  • Cyclic ketone
  • Secondary alcohol
  • Ketone
  • Hemiacetal
  • Acetal
  • Oxacycle
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Carbonyl group
  • Aldehyde
  • Alcohol
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.31ChemAxon
pKa (Strongest Acidic)11.38ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area119.36 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity135.66 m³·mol⁻¹ChemAxon
Polarizability54.61 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10356244
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23247573
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]