NP-MRD: Showing NP-Card for 5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one (NP0217757)

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Record Information

Version

2.0

Created at

2022-09-05 18:12:24 UTC

Updated at

2022-09-05 18:12:24 UTC

NP-MRD ID

NP0217757

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one

Description

5,7,9-Trihydroxy-10,12-dimethyl-3-(propan-2-yl)-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. Based on a literature review very few articles have been published on 5,7,9-trihydroxy-10,12-dimethyl-3-(propan-2-yl)-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052220122D          

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M  END


  Mrv1652309052220122D          

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   -0.0862    2.3412    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1707    1.5786    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9501    2.3736    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5282    2.9621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1513    2.5800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9078    2.0999    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6714    1.7876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3237    2.2927    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7827    0.9701    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5463    0.6578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1986    1.1630    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6577   -0.1596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0054   -0.6648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1167   -1.4822    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2418   -0.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1304    0.4650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5895   -0.8576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8259   -0.5453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1848   -1.0645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 24 20  1  4  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 16 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0217757

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(O)CC(O)C(C)C(O)C(C)CC(C)C1OC(=O)C(N=C(O)CC(O)CC(O)C(C)CC1C)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C28H53NO8/c1-14(2)25-28(36)37-27(17(5)9-15(3)22(32)12-21(31)13-24(34)29-25)18(6)10-16(4)26(35)20(8)23(33)11-19(7)30/h14-23,25-27,30-33,35H,9-13H2,1-8H3,(H,29,34)

> <INCHI_KEY>
SKLALQBGVCJHSK-UHFFFAOYSA-N

> <FORMULA>
C28H53NO8

> <MOLECULAR_WEIGHT>
531.731

> <EXACT_MASS>
531.377117671

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
90

> <JCHEM_AVERAGE_POLARIZABILITY>
59.99142876100016

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5,7,9-trihydroxy-10,12-dimethyl-3-(propan-2-yl)-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one

> <JCHEM_LOGP>
2.459246998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.210329178250642

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.477602934717479

> <JCHEM_PKA_STRONGEST_BASIC>
1.4547150798301125

> <JCHEM_POLAR_SURFACE_AREA>
160.04

> <JCHEM_REFRACTIVITY>
141.7201

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0     -10.761  -0.130   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.427   0.640   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -9.427   2.180   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -8.094  -0.130   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.760   0.640   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -6.760   2.180   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -5.426  -0.130   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.426  -1.670   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.093   0.640   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -4.093   2.180   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -2.759  -0.130   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.759  -1.670   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.425   0.640   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.092  -0.130   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.092  -1.670   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.242   0.640   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       0.067   1.635   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       0.650   3.061   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.161   4.370   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.185   2.947   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.773   4.431   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.853   5.529   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.282   4.816   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       3.561   3.920   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       4.987   3.337   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.204   4.280   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       5.194   1.811   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.620   1.228   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.837   2.171   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       6.828  -0.298   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.610  -1.241   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       5.818  -2.767   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       4.185  -0.658   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.977   0.868   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       2.967  -1.601   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       1.542  -1.018   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       0.345  -1.987   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   36                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   20   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   16   37                                                  
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₅₃NO₈

Average Mass

531.7310 Da

Monoisotopic Mass

531.37712 Da

IUPAC Name

5,7,9-trihydroxy-10,12-dimethyl-3-(propan-2-yl)-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one

Traditional Name

5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one

CAS Registry Number

Not Available

SMILES

CC(O)CC(O)C(C)C(O)C(C)CC(C)C1OC(=O)C(N=C(O)CC(O)CC(O)C(C)CC1C)C(C)C

InChI Identifier

InChI=1S/C28H53NO8/c1-14(2)25-28(36)37-27(17(5)9-15(3)22(32)12-21(31)13-24(34)29-25)18(6)10-16(4)26(35)20(8)23(33)11-19(7)30/h14-23,25-27,30-33,35H,9-13H2,1-8H3,(H,29,34)

InChI Key

SKLALQBGVCJHSK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Diterpene lactone
Diterpenoid
Macrolide lactam
Alpha-amino acid ester
Macrolactam
Macrolide
Alpha-amino acid or derivatives
Carboxamide group
Carboxylic acid ester
Lactam
Lactone
Secondary alcohol
Secondary carboxylic acid amide
Monocarboxylic acid or derivatives
Azacycle
Oxacycle
Carboxylic acid derivative
Polyol
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxygen compound
Organic nitrogen compound
Organic oxide
Organopnictogen compound
Organonitrogen compound
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.46	ChemAxon
pKa (Strongest Acidic)	5.48	ChemAxon
pKa (Strongest Basic)	1.45	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	160.04 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	141.72 m³·mol⁻¹	ChemAxon
Polarizability	59.99 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

152793808

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one (NP0217757)

MOL for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

3D MOL for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

3D SDF for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

3D-SDF for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

PDB for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

3D PDB for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

SMILES for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

INCHI for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

Structure for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)

3D Structure for NP0217757 (5,7,9-trihydroxy-3-isopropyl-10,12-dimethyl-13-(5,7,9-trihydroxy-4,6-dimethyldecan-2-yl)-1-oxa-4-azacyclotridec-4-en-2-one)