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Showing NP-Card for 3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one (NP0217677)

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Record Information
Version2.0
Created at2022-09-05 18:06:05 UTC
Updated at2022-09-05 18:06:05 UTC
NP-MRD IDNP0217677
Secondary Accession NumbersNone
Natural Product Identification
Common Name3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one
Description3,4-Bis[(2H-1,3-benzodioxol-5-yl)methyl]-5-methoxyoxolan-2-one belongs to the class of organic compounds known as dibenzylbutyrolactone lignans. These are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety. 3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one is found in Aristolochia elegans. Based on a literature review very few articles have been published on 3,4-bis[(2H-1,3-benzodioxol-5-yl)methyl]-5-methoxyoxolan-2-one.
Structure
Thumb
MOLSDFPDBSMILESInChI

MOL for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)


  Mrv1652309052220062D          

 28 32  0  0  0  0            999 V2000
    5.0933    3.6300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7064    3.0780    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5349    2.2710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0869    1.6579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6744    0.9434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0100    0.1898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8675    1.1150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2544    0.5629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4259   -0.2440    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105   -0.4990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3820   -1.3060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7689   -1.8580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9843   -1.6030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8128   -0.7961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4994   -2.2705    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9843   -2.9379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7689   -2.6830    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
  7 18  1  0  0  0  0
  3 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 20 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END
Download

3D MOL for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)

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3D SDF for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)

  Mrv1652309052220062D          

 28 32  0  0  0  0            999 V2000
    5.0933    3.6300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7064    3.0780    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5349    2.2710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0869    1.6579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6744    0.9434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0100    0.1898    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8675    1.1150    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2544    0.5629    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4259   -0.2440    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2105   -0.4990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3820   -1.3060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7689   -1.8580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9843   -1.6030    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8128   -0.7961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4994   -2.2705    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9843   -2.9379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7689   -2.6830    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7812    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 12 17  1  0  0  0  0
  7 18  1  0  0  0  0
  3 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 20 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 23 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0217677

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1OC(=O)C(CC2=CC=C3OCOC3=C2)C1CC1=CC=C2OCOC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O7/c1-23-21-15(7-13-3-5-17-19(9-13)27-11-25-17)14(20(22)28-21)6-12-2-4-16-18(8-12)26-10-24-16/h2-5,8-9,14-15,21H,6-7,10-11H2,1H3

> <INCHI_KEY>
HBOUIMWCFJKPNL-UHFFFAOYSA-N

> <FORMULA>
C21H20O7

> <MOLECULAR_WEIGHT>
384.384

> <EXACT_MASS>
384.120902984

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
38.964104018862834

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3,4-bis[(2H-1,3-benzodioxol-5-yl)methyl]-5-methoxyoxolan-2-one

> <JCHEM_LOGP>
3.6252744499999996

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.0638829778665455

> <JCHEM_POLAR_SURFACE_AREA>
72.45000000000002

> <JCHEM_REFRACTIVITY>
96.11630000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3,4-bis(2H-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)
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PDB for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)
HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       9.508   6.776   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      10.652   5.746   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      10.332   4.239   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      11.362   3.095   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      10.592   1.761   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      11.219   0.354   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       9.086   2.081   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.941   1.051   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.262  -0.456   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.726  -0.931   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.046  -2.438   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.902  -3.468   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.437  -2.992   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.117  -1.486   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.532  -4.238   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       7.437  -5.484   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       8.902  -5.008   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.925   3.613   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   18                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   18                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13    9                                                       
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   12                                                       
CONECT   18    7    3   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24   20                                                       
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

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3D PDB for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)
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SMILES for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)
COC1OC(=O)C(CC2=CC=C3OCOC3=C2)C1CC1=CC=C2OCOC2=C1
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INCHI for NP0217677 (3,4-bis(2h-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one)
InChI=1S/C21H20O7/c1-23-21-15(7-13-3-5-17-19(9-13)27-11-25-17)14(20(22)28-21)6-12-2-4-16-18(8-12)26-10-24-16/h2-5,8-9,14-15,21H,6-7,10-11H2,1H3
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View in JSmol
SynonymsNot Available
Chemical FormulaC21H20O7
Average Mass384.3840 Da
Monoisotopic Mass384.12090 Da
IUPAC Name3,4-bis[(2H-1,3-benzodioxol-5-yl)methyl]-5-methoxyoxolan-2-one
Traditional Name3,4-bis(2H-1,3-benzodioxol-5-ylmethyl)-5-methoxyoxolan-2-one
CAS Registry NumberNot Available
SMILES
COC1OC(=O)C(CC2=CC=C3OCOC3=C2)C1CC1=CC=C2OCOC2=C1
InChI Identifier
InChI=1S/C21H20O7/c1-23-21-15(7-13-3-5-17-19(9-13)27-11-25-17)14(20(22)28-21)6-12-2-4-16-18(8-12)26-10-24-16/h2-5,8-9,14-15,21H,6-7,10-11H2,1H3
InChI KeyHBOUIMWCFJKPNL-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Aristolochia elegansLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as dibenzylbutyrolactone lignans. These are lignan compounds containing a 3,4-dibenzyloxolan-2-one moiety.
KingdomOrganic compounds  
Super ClassLignans, neolignans and related compounds  
ClassFuranoid lignans  
Sub ClassTetrahydrofuran lignans  
Direct ParentDibenzylbutyrolactone lignans  
Alternative Parents
Substituents
  • Dibenzylbutyrolactone
    • 

  • Lignan lactone
    • 

  • Benzodioxole
    • 

  • Gamma butyrolactone
    • 

  • Benzenoid
    • 

  • Oxolane
    • 

  • Lactone
    • 

  • Carboxylic acid ester
    • 

  • Monocarboxylic acid or derivatives
    • 

  • Acetal
    • 

  • Carboxylic acid derivative
    • 

  • Organoheterocyclic compound
    • 

  • Oxacycle
    • 

  • Organooxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organic oxide
    • 

  • Carbonyl group
    • 

  • Organic oxygen compound
    • 

  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.63ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area72.45 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity96.12 m³·mol⁻¹ChemAxon
Polarizability38.96 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound78200717  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]