NP-MRD: Showing NP-Card for methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate (NP0217592)

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Record Information

Version

2.0

Created at

2022-09-05 17:59:40 UTC

Updated at

2022-09-05 17:59:40 UTC

NP-MRD ID

NP0217592

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate

Description

Lonicerine belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate is found in Kopsia fruticosa and Kopsia singapurensis. methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate was first documented in 2016 (PMID: 26961469). Based on a literature review very few articles have been published on Lonicerine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052219592D          

 27 31  0  0  0  0            999 V2000
    7.2490    1.8138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4757    1.5264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8401    2.0524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0828    2.8409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6969    3.5701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9084    3.8128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2780    2.7649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1109    1.6665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3224    1.9092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5182    1.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2755    0.9367    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2920    1.0848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5629    0.6989    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9908    0.6462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9604   -0.1782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9365    2.6384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7771    2.7286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7416    3.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1699    4.0044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1793    3.4269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5044    3.9014    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8445    3.4062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0350    3.5652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4926    2.9436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7596    2.1630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5692    2.0040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1116    2.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  6 20  1  0  0  0  0
 16 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
 16 27  1  0  0  0  0
M  END

     RDKit          3D

 53 57  0  0  0  0  0  0  0  0999 V2000
    4.7600   -1.0911    0.2228 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4841   -0.4264    0.6817 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3098   -1.0023    0.4936 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2601   -2.3143   -0.1567 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9726   -2.7845   -0.5324 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1608   -2.1800    0.0684 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1758   -1.4738    1.3512 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0726   -0.3209    0.9573 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4707    0.6170   -0.0588 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4026    0.6247   -1.2525 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0350    1.4946   -2.2593 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5056    2.0177    0.4328 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0414    2.2484    1.5377 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0192    3.0809   -0.2638 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0048    4.4184    0.1823 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9048    0.1891   -0.4192 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4970    0.8226   -1.6516 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3268   -0.2258   -2.6973 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5773   -1.2553   -2.1370 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9323   -1.2707   -0.8115 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3703   -1.5272   -0.7348 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8074   -0.7733    0.3986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9152   -0.9989    1.1874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1708   -0.1530    2.2365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3200    0.8859    2.4663 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2183    1.1142    1.6855 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9216    0.2928    0.6234 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8205   -2.0619    0.7532 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7236   -1.2832   -0.8642 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6009   -0.4813    0.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5226    0.5444    1.1783 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7802   -3.0723    0.5049 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9037   -2.2836   -1.0598 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8193   -2.9040   -1.5503 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8601   -3.0204    0.3615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6350   -1.2508    2.0182 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8349   -2.1947    1.9249 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2393    0.2628    1.8877 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6638   -0.3450   -1.6539 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3664    1.0703   -0.8511 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4170    1.1804   -3.1114 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7356    4.5828    0.9971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9959    4.8117    0.3976 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3936    5.0248   -0.6858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1644    1.8240   -1.8865 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6268    0.9348   -1.5301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9235    0.1946   -3.6189 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3000   -0.7253   -2.9931 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8764   -2.1286   -1.3898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6011   -1.8323    1.0055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0415   -0.3479    2.8397 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5562    1.5456    3.3179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5944    1.9462    1.9125 H   0  0  0  0  0  0  0  0  0  0  0  0
 15 14  1  0
 14 12  1  0
 12 13  2  0
  9 12  1  1
  9 10  1  0
 10 11  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  6 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  2  0
 25 26  1  0
 26 27  2  0
 27 16  1  0
 16 17  1  6
 17 18  1  0
 18 19  1  0
 16  9  1  0
  3  8  1  0
 16 20  1  0
 20 19  1  6
 27 22  1  0
 15 42  1  0
 15 43  1  0
 15 44  1  0
 10 39  1  0
 10 40  1  0
 11 41  1  0
  8 38  1  1
  7 36  1  0
  7 37  1  0
  6 35  1  1
  5 34  1  0
  4 32  1  0
  4 33  1  0
  2 31  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
 21 49  1  0
 23 50  1  0
 24 51  1  0
 25 52  1  0
 26 53  1  0
 17 45  1  0
 17 46  1  0
 18 47  1  0
 18 48  1  0
M  END


  Mrv1652309052219592D          

 27 31  0  0  0  0            999 V2000
    7.2490    1.8138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4757    1.5264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8401    2.0524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0828    2.8409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6969    3.5701    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9084    3.8128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2780    2.7649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1109    1.6665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3224    1.9092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5182    1.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2755    0.9367    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2920    1.0848    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5629    0.6989    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9908    0.6462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9604   -0.1782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9365    2.6384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7771    2.7286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7416    3.0716    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1699    4.0044    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1793    3.4269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5044    3.9014    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8445    3.4062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0350    3.5652    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4926    2.9436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7596    2.1630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5692    2.0040    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1116    2.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  9 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  6 20  1  0  0  0  0
 16 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 22 27  1  0  0  0  0
 16 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0217592

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1(CO)C2CC(NC\C2=C/C)C23NC4=CC=CC=C4C12CCO3

> <INCHI_IDENTIFIER>
InChI=1S/C21H26N2O4/c1-3-13-11-22-17-10-15(13)19(12-24,18(25)26-2)20-8-9-27-21(17,20)23-16-7-5-4-6-14(16)20/h3-7,15,17,22-24H,8-12H2,1-2H3/b13-3+

> <INCHI_KEY>
OQJSSGHGITUGKL-QLKAYGNNSA-N

> <FORMULA>
C21H26N2O4

> <MOLECULAR_WEIGHT>
370.449

> <EXACT_MASS>
370.189257325

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
38.803045754445954

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (13Z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1^{10,14}.0^{1,9}.0^{2,7}]nonadeca-2,4,6-triene-15-carboxylate

> <JCHEM_LOGP>
1.318814545

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.82568430088902

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.716886954742819

> <JCHEM_PKA_STRONGEST_BASIC>
8.490951965964854

> <JCHEM_POLAR_SURFACE_AREA>
79.82000000000001

> <JCHEM_REFRACTIVITY>
102.40050000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (13Z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1^{10,14}.0^{1,9}.0^{2,7}]nonadeca-2,4,6-triene-15-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      13.531   3.386   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      12.088   2.849   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.902   3.831   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.355   5.303   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0      10.634   6.664   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0       9.162   7.117   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.852   5.161   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.540   3.111   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.069   3.564   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.567   3.220   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.114   1.749   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.012   2.025   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.651   1.305   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       9.316   1.206   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       9.259  -0.333   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.348   4.925   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.184   5.093   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.118   5.734   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.917   7.475   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       7.801   6.397   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       6.542   7.283   0.000  0.00  0.00           N+0
HETATM   22  C   UNK     0       5.310   6.358   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.799   6.655   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.786   5.495   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.285   4.038   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.796   3.741   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.808   4.901   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8                                                       
CONECT    8    7    3    9                                                  
CONECT    9    8   10   12   16                                             
CONECT   10    9   11                                                       
CONECT   11   10                                                            
CONECT   12    9   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14                                                            
CONECT   16    9   17   20   27                                             
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    6   16   21                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   22   16                                                  
MASTER        0    0    0    0    0    0    0    0   27    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₆N₂O₄

Average Mass

370.4490 Da

Monoisotopic Mass

370.18926 Da

IUPAC Name

methyl (13Z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1^{10,14}.0^{1,9}.0^{2,7}]nonadeca-2,4,6-triene-15-carboxylate

Traditional Name

methyl (13Z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1^{10,14}.0^{1,9}.0^{2,7}]nonadeca-2,4,6-triene-15-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1(CO)C2CC(NC\C2=C/C)C23NC4=CC=CC=C4C12CCO3

InChI Identifier

InChI=1S/C21H26N2O4/c1-3-13-11-22-17-10-15(13)19(12-24,18(25)26-2)20-8-9-27-21(17,20)23-16-7-5-4-6-14(16)20/h3-7,15,17,22-24H,8-12H2,1-2H3/b13-3+

InChI Key

OQJSSGHGITUGKL-QLKAYGNNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kopsia fruticosa	LOTUS Database	35616633
Kopsia singapurensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Carbazoles

Alternative Parents

Substituents

Carbazole
Delta amino acid or derivatives
Dihydroindole
Beta-hydroxy acid
Aralkylamine
Secondary aliphatic/aromatic amine
Hydroxy acid
Benzenoid
Piperidine
Methyl ester
Tetrahydrofuran
Amino acid or derivatives
Carboxylic acid ester
Carboxylic acid derivative
Secondary aliphatic amine
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Secondary amine
Organic nitrogen compound
Amine
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organic oxygen compound
Organonitrogen compound
Organooxygen compound
Organopnictogen compound
Primary alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.32	ChemAxon
pKa (Strongest Acidic)	11.72	ChemAxon
pKa (Strongest Basic)	8.49	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	79.82 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	102.4 m³·mol⁻¹	ChemAxon
Polarizability	38.8 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00051320

Chemspider ID

4520977

KEGG Compound ID

C17557

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5370086

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Li Y, Zhu S, Li J, Li A: Asymmetric Total Syntheses of Aspidodasycarpine, Lonicerine, and the Proposed Structure of Lanciferine. J Am Chem Soc. 2016 Mar 30;138(12):3982-5. doi: 10.1021/jacs.6b00764. Epub 2016 Mar 18. [PubMed:26961469 ]
LOTUS database [Link]

Showing NP-Card for methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate (NP0217592)

MOL for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

3D MOL for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

3D SDF for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

3D-SDF for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

PDB for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

3D PDB for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

SMILES for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

INCHI for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

Structure for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)

3D Structure for NP0217592 (methyl (13z)-13-ethylidene-15-(hydroxymethyl)-18-oxa-8,11-diazapentacyclo[7.6.3.1¹⁰,¹⁴.0¹,⁹.0²,⁷]nonadeca-2,4,6-triene-15-carboxylate)