NP-MRD: Showing NP-Card for 13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione (NP0217358)

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Record Information

Version

2.0

Created at

2022-09-05 17:40:58 UTC

Updated at

2022-09-05 17:40:58 UTC

NP-MRD ID

NP0217358

Secondary Accession Numbers

None

Natural Product Identification

Common Name

13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione

Description

13-(1,6-Dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]Tridec-11-ene-3,10-dione belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. 13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione is found in Trichoderma reesei. Based on a literature review very few articles have been published on 13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]Tridec-11-ene-3,10-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052219402D          

 38 40  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309052219402D          

 38 40  0  0  0  0            999 V2000
    4.7674    0.0694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.9694    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2243    1.9817    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8570    1.3377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6633   -1.1567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  4  0  0  0
  8  6  1  4  0  0  0
  8  9  2  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
  5 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 20 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29 28  1  4  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 24 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 14 35  1  0  0  0  0
 18 35  1  0  0  0  0
 35 36  1  0  0  0  0
 15 37  1  0  0  0  0
  2 37  1  0  0  0  0
 37 38  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0217358

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=C(O)C(C2C(C)(OC3(O)C2(C)C(=O)C(CC3(C)O)C(=O)CCC=CCO)C1=O)=C(O)C=CC=CCO

> <INCHI_IDENTIFIER>
InChI=1S/C28H36O10/c1-16-21(33)20(19(32)12-8-6-10-14-30)22-26(3)24(35)17(18(31)11-7-5-9-13-29)15-25(2,36)28(26,37)38-27(22,4)23(16)34/h5-6,8-10,12,17,22,29-30,32-33,36-37H,7,11,13-15H2,1-4H3

> <INCHI_KEY>
HYLKUZRJQSPXAI-UHFFFAOYSA-N

> <FORMULA>
C28H36O10

> <MOLECULAR_WEIGHT>
532.586

> <EXACT_MASS>
532.230847359

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
55.63909612586785

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0^{2,7}]tridec-11-ene-3,10-dione

> <JCHEM_LOGP>
1.203282273333333

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.441814156589503

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.050863996164061

> <JCHEM_PKA_STRONGEST_BASIC>
-2.271214899419948

> <JCHEM_POLAR_SURFACE_AREA>
181.82

> <JCHEM_REFRACTIVITY>
143.52609999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0^{2,7}]tridec-11-ene-3,10-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       8.899   0.130   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.393   0.450   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.917   1.914   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       7.947   3.059   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       5.410   2.235   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.935   3.699   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.428   4.019   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.965   4.844   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.471   4.524   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.502   5.668   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.008   5.348   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.039   6.492   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      12.545   6.172   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.380   1.090   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.856  -0.374   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.176  -1.881   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.610  -1.280   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.364  -0.374   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.044  -1.881   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       0.858  -0.695   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.435  -2.122   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.448  -1.511   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.173   0.450   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.303   1.914   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -0.727   3.059   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -0.251   4.524   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -2.234   2.739   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -2.709   1.274   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.679   0.130   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -2.155  -1.335   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -1.124  -2.479   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -1.600  -3.944   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       1.810   2.235   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.285   3.699   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       2.840   1.090   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       3.466   2.497   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.362  -0.695   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       6.838  -2.159   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   37                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   14                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14    5   15   35                                                  
CONECT   15   14   16   17   37                                             
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   20   35                                             
CONECT   19   18                                                            
CONECT   20   18   21   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20   24                                                       
CONECT   24   23   25   33                                                  
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33   24   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   14   18   36                                             
CONECT   36   35                                                            
CONECT   37   15    2   38                                                  
CONECT   38   37                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₆O₁₀

Average Mass

532.5860 Da

Monoisotopic Mass

532.23085 Da

IUPAC Name

13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0^{2,7}]tridec-11-ene-3,10-dione

Traditional Name

13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0^{2,7}]tridec-11-ene-3,10-dione

CAS Registry Number

Not Available

SMILES

CC1=C(O)C(C2C(C)(OC3(O)C2(C)C(=O)C(CC3(C)O)C(=O)CCC=CCO)C1=O)=C(O)C=CC=CCO

InChI Identifier

InChI=1S/C28H36O10/c1-16-21(33)20(19(32)12-8-6-10-14-30)22-26(3)24(35)17(18(31)11-7-5-9-13-29)15-25(2,36)28(26,37)38-27(22,4)23(16)34/h5-6,8-10,12,17,22,29-30,32-33,36-37H,7,11,13-15H2,1-4H3

InChI Key

HYLKUZRJQSPXAI-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trichoderma reesei	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Fatty alcohols

Alternative Parents

Substituents

Fatty alcohol
Cyclohexenone
1,3-diketone
1,3-dicarbonyl compound
Vinylogous acid
Tetrahydrofuran
Tertiary alcohol
Cyclic alcohol
Ketone
Hemiacetal
Oxacycle
Organoheterocyclic compound
Polyol
Enol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.2	ChemAxon
pKa (Strongest Acidic)	5.05	ChemAxon
pKa (Strongest Basic)	-2.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	181.82 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	143.53 m³·mol⁻¹	ChemAxon
Polarizability	55.64 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162814342

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione (NP0217358)

MOL for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

3D MOL for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

3D SDF for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

3D-SDF for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

PDB for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

3D PDB for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

SMILES for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

INCHI for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

Structure for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)

3D Structure for NP0217358 (13-(1,6-dihydroxyhexa-2,4-dien-1-ylidene)-6,7,12-trihydroxy-4-(6-hydroxyhex-4-enoyl)-2,6,9,11-tetramethyl-8-oxatricyclo[7.4.0.0²,⁷]tridec-11-ene-3,10-dione)