NP-MRD: Showing NP-Card for methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate (NP0217331)

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Record Information

Version

2.0

Created at

2022-09-05 17:38:51 UTC

Updated at

2022-09-05 17:38:51 UTC

NP-MRD ID

NP0217331

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate

Description

Polymatin A belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate is found in Melampodium longipilum and Smallanthus macroscyphus. methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate was first documented in 2008 (PMID: 18239309). Based on a literature review a small amount of articles have been published on Polymatin A (PMID: 24522008) (PMID: 27787995) (PMID: 27062070) (PMID: 24309157).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052219382D          

 28 29  0  0  1  0            999 V2000
    2.9721   -1.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2172   -0.2576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7239    0.4037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8990    0.3933    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2004    1.0772    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9882    0.8321    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6974    1.2535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1726    0.5994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1830   -0.2255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1262    1.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8458    0.8680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8562    0.0430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1470   -0.3784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1573   -1.2033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4481   -1.6248    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8769   -1.6068    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8873   -2.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4274    0.0251    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4170    0.8500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7181   -0.3963    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7285   -1.2213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0192   -1.6427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2996   -1.2392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0296   -2.4676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7492   -2.8711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3204   -2.8891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6008   -2.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9985    0.0072    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 26 27  1  0  0  0  0
 20 28  1  0  0  0  0
 28  2  1  1  0  0  0
  6 28  1  0  0  0  0
M  END

     RDKit          3D

 54 55  0  0  0  0  0  0  0  0999 V2000
    0.2377   -2.0413   -2.2916 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2639   -1.9391   -0.9788 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9152   -2.8998   -0.0997 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4753   -3.9628   -0.4298 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7968   -2.4078    1.1957 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3768   -1.5525    1.2708 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5862   -2.3735    1.5267 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8481   -2.0290    1.5087 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8407   -3.1505    1.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4890   -0.7376    1.2347 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8330    0.4949    1.7094 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5614    1.4514    0.5836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3855    1.8354    0.1924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3137    2.7850   -0.9362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2133    3.2065   -1.3763 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4549    3.2592   -1.5667 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4219    4.1648   -2.6451 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1010    1.3881    0.7940 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7507    2.5177    0.7505 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5125    0.3508   -0.1083 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8818    0.1746    0.0678 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7968    0.4662   -0.9311 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2996    0.9051   -2.0270 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2204    0.3248   -0.8524 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0998    0.6690   -1.9999 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8113   -0.1176    0.2437 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9532   -0.4677    1.4035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3044   -0.9157   -0.0681 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6935   -2.8400   -2.8205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2703   -1.2847   -2.9098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0948   -0.8964    2.1282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3149   -3.4439    1.7697 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3647   -3.8507    2.5069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1157   -3.6634    0.8592 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7687   -2.7673    2.2416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5749   -0.7335    1.5379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5729   -0.6589    0.1046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0019    0.4040    2.4029 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6132    1.0605    2.3183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4535    1.8295    0.0782 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4298    4.6510   -2.7749 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1594    4.9799   -2.3888 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7497    3.6906   -3.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1731    1.1122    1.8434 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3479    2.5358    1.5382 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3493    0.7511   -1.1551 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5486    0.6513   -2.9555 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9877    0.0199   -1.9995 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4683    1.7154   -1.8064 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9099   -0.2233    0.2943 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6458   -0.8152    2.2266 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3128   -1.3434    1.2011 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4057    0.4062    1.8147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2972   -0.6850   -0.4448 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 16  1  0
 16 14  1  0
 14 15  2  0
 14 13  1  0
 13 12  2  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  1  0
  8  7  2  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  2  0
  3  2  1  0
  2  1  2  3
  2 28  1  0
 28 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 24 26  2  0
 26 27  1  0
 20 18  1  0
 18 19  1  0
 18 13  1  0
 28  6  1  0
 17 41  1  0
 17 42  1  0
 17 43  1  0
 12 40  1  0
 11 38  1  0
 11 39  1  0
 10 36  1  0
 10 37  1  0
  9 33  1  0
  9 34  1  0
  9 35  1  0
  7 32  1  0
  6 31  1  1
  1 29  1  0
  1 30  1  0
 28 54  1  6
 20 46  1  6
 25 47  1  0
 25 48  1  0
 25 49  1  0
 26 50  1  0
 27 51  1  0
 27 52  1  0
 27 53  1  0
 18 44  1  1
 19 45  1  0
M  END


  Mrv1652309052219382D          

 28 29  0  0  1  0            999 V2000
    2.9721   -1.0454    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2172   -0.2576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7239    0.4037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8990    0.3933    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2004    1.0772    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9882    0.8321    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6974    1.2535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1726    0.5994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1830   -0.2255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1262    1.2715    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8458    0.8680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8562    0.0430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1470   -0.3784    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1573   -1.2033    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4481   -1.6248    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8769   -1.6068    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8873   -2.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4274    0.0251    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4170    0.8500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7181   -0.3963    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7285   -1.2213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0192   -1.6427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2996   -1.2392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0296   -2.4676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7492   -2.8711    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3204   -2.8891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6008   -2.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9985    0.0072    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 26 27  1  0  0  0  0
 20 28  1  0  0  0  0
 28  2  1  1  0  0  0
  6 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0217331

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C/CC\C(C)=C\[C@H]2OC(=O)C(=C)[C@@H]2[C@H](OC(=O)C(\C)=C/C)[C@H]\1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H26O7/c1-6-12(3)19(23)28-18-16-13(4)20(24)27-15(16)10-11(2)8-7-9-14(17(18)22)21(25)26-5/h6,9-10,15-18,22H,4,7-8H2,1-3,5H3/b11-10+,12-6-,14-9+/t15-,16+,17+,18+/m1/s1

> <INCHI_KEY>
GPNBBLNJDPYZAB-QXBGOXKESA-N

> <FORMULA>
C21H26O7

> <MOLECULAR_WEIGHT>
390.432

> <EXACT_MASS>
390.167853177

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
39.882064752538724

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (3aS,4S,5S,11aR)-5-hydroxy-10-methyl-4-{[(2Z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

> <JCHEM_LOGP>
3.3358659226666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.276192928442168

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5527932130993936

> <JCHEM_POLAR_SURFACE_AREA>
99.13000000000002

> <JCHEM_REFRACTIVITY>
103.0407

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (3aS,4S,5S,11aR)-5-hydroxy-10-methyl-4-{[(2Z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       5.548  -1.951   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.005  -0.481   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.085   0.754   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.545   0.734   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0       5.974   2.011   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       7.445   1.553   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.769   2.340   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.656   1.119   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.675  -0.421   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.436   2.373   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.779   1.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.798   0.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.474  -0.706   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.494  -2.246   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      10.170  -3.033   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      12.837  -2.999   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      12.856  -4.539   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      10.131   0.047   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      10.112   1.587   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.807  -0.740   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.826  -2.280   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       7.503  -3.066   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.159  -2.313   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.522  -4.606   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.865  -5.359   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.198  -5.393   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.855  -4.640   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.464   0.013   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   28                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   28                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   18                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16                                                            
CONECT   18   13   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   28                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
CONECT   28   20    2    6                                                  
MASTER        0    0    0    0    0    0    0    0   28    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₆O₇

Average Mass

390.4320 Da

Monoisotopic Mass

390.16785 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C/CC\C(C)=C\[C@H]2OC(=O)C(=C)[C@@H]2[C@H](OC(=O)C(\C)=C/C)[C@H]\1O

InChI Identifier

InChI=1S/C21H26O7/c1-6-12(3)19(23)28-18-16-13(4)20(24)27-15(16)10-11(2)8-7-9-14(17(18)22)21(25)26-5/h6,9-10,15-18,22H,4,7-8H2,1-3,5H3/b11-10+,12-6-,14-9+/t15-,16+,17+,18+/m1/s1

InChI Key

GPNBBLNJDPYZAB-QXBGOXKESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Melampodium longipilum	LOTUS Database	35616633
Smallanthus macroscyphus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Germacrane sesquiterpenoid
Sesquiterpenoid
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Fatty acid ester
Gamma butyrolactone
Fatty acyl
Hydroxy acid
Alpha,beta-unsaturated carboxylic ester
Oxolane
Enoate ester
Methyl ester
Lactone
Carboxylic acid ester
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011830

Chemspider ID

76788867

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101324863

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sanchez-Toranzo G, Zapata-Martinez J, Catalan C, Buhler MI: Effect of different types of sesquiterpene lactones on the maturation of Rhinella arenarum oocytes. Zygote. 2015 Jun;23(3):406-11. doi: 10.1017/S0967199413000695. Epub 2014 Feb 13. [PubMed:24522008 ]
Hong SS, Lee SA, Han XH, Lee MH, Hwang JS, Park JS, Oh KW, Han K, Lee MK, Lee H, Kim W, Lee D, Hwang BY: Melampolides from the leaves of Smallanthus sonchifolius and their inhibitory activity of lps-induced nitric oxide production. Chem Pharm Bull (Tokyo). 2008 Feb;56(2):199-202. doi: 10.1248/cpb.56.199. [PubMed:18239309 ]
Arciniegas A, Perez-Castorena AL, Nieto-Camacho A, Villasenor JL, Romo de Vivar A: Terpenoids from Melampodium perfoliatum. J Nat Prod. 2016 Nov 23;79(11):2780-2787. doi: 10.1021/acs.jnatprod.6b00321. Epub 2016 Oct 27. [PubMed:27787995 ]
Serra-Barcellona C, Honore SM, Cabrera WM, Habib NC, Genta SB, Sanchez SS: Polymatin A from Smallanthus macroscyphus leaves: A safe and promising antidiabetic compound. J Appl Toxicol. 2016 Nov;36(11):1516-25. doi: 10.1002/jat.3312. Epub 2016 Apr 7. [PubMed:27062070 ]
Serra-Barcellona C, Coll Araoz MV, Cabrera WM, Habib NC, Honore SM, Catalan CA, Grau A, Genta SB, Sanchez SS: Smallanthus macroscyphus: a new source of antidiabetic compounds. Chem Biol Interact. 2014 Feb 25;209:35-47. doi: 10.1016/j.cbi.2013.11.015. Epub 2013 Dec 2. [PubMed:24309157 ]
LOTUS database [Link]

Showing NP-Card for methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate (NP0217331)

MOL for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D MOL for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D SDF for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D-SDF for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

PDB for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D PDB for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

SMILES for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

INCHI for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

Structure for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)

3D Structure for NP0217331 (methyl (3as,4s,5s,11ar)-5-hydroxy-10-methyl-4-{[(2z)-2-methylbut-2-enoyl]oxy}-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylate)