NP-MRD: Showing NP-Card for (1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one (NP0216943)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 17:06:36 UTC

Updated at

2022-09-05 17:06:37 UTC

NP-MRD ID

NP0216943

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one

Description

Baimantuoluoline E belongs to the class of organic compounds known as steroid lactones. These are sterol lipids containing a lactone moiety linked to the steroid skeleton. (1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one is found in Datura metel. Based on a literature review very few articles have been published on Baimantuoluoline E.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052219062D          

 36 41  0  0  1  0            999 V2000
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1731   -1.7404    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5218   -1.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8390   -1.6970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0683   -2.4895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5619   -3.1408    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7664   -2.9223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0493   -3.3302    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8308   -4.1258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0122   -4.2283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8668   -3.7244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699   -3.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7513   -4.6534    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0343   -5.0614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1368   -5.8800    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2387   -4.8428    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7324   -5.4942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0433   -6.2583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853   -1.5952    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2655   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777   -0.6740    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3580    0.1019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6095   -1.3047    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8898   -0.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4216   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9534   -1.7902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6731   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8610   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5807   -3.4873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3292   -2.0807    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0489   -2.8566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5171   -2.2259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1444   -3.9229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  1  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 13 12  1  1  0  0  0
  7 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  0  0  0  0
  3 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 24 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 20 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
  2 35  1  0  0  0  0
 35 36  1  1  0  0  0
M  END

     RDKit          3D

 76 81  0  0  0  0  0  0  0  0999 V2000
   -0.4885   -1.4808   -1.9996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0226   -0.6680   -0.8029 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7874    0.6693   -0.7516 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3899    1.2699   -2.0731 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0123    0.7564   -2.2904 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3245   -0.0819   -1.0548 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5313   -0.8623   -1.1345 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9588   -1.4725    0.1663 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2960   -1.3386    0.4692 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8443   -0.0787    0.4508 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8002    0.6245    1.7614 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1728    0.8255   -0.5932 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7364   -0.1515   -1.6977 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7873   -1.0887   -1.8253 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0842   -0.8773   -1.4041 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0430   -1.1625   -2.1259 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2800   -0.2963   -0.0581 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.1350    0.9061    0.0125 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1911    1.2955    1.3693 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2374    0.5728   -0.5387 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7029    1.9709   -0.1382 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0791    2.0430    0.4060 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9774    2.4126   -0.5989 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5027    0.8838    1.2291 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.9171    0.9719    2.5158 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9867    0.9373    1.4623 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3837   -0.1495    2.4117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6846   -1.2866    2.3996 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5580   -1.5238    1.5102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0626   -2.6713    1.4731 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0262   -0.4514    0.6864 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.5568   -0.7017   -0.7307 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5250   -0.3319    0.6317 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7874   -1.6089    0.5899 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2716   -1.3474    0.4821 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2502   -2.6664    0.5387 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3703   -1.0645   -2.4793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7395   -2.5277   -1.6526 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3126   -1.6332   -2.7488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2958    1.2581    0.0469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4317    2.3796   -2.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1084    0.9234   -2.8374 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6916    1.6446   -2.2904 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0235    0.2043   -3.2221 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4245    0.7261   -0.2438 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3587   -1.7351   -1.8428 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7679   -2.5841    0.1760 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3770   -1.0402    1.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9074    1.7052    1.5883 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4629    0.2027    2.5311 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7544    0.4929    2.1623 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3216    1.3651   -0.1480 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9200    1.5109   -1.0277 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5909    0.3180   -2.6616 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7204   -1.0882    0.5832 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8468    1.7773   -0.5672 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1824    0.5854   -0.2153 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8075    0.6533    1.8408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7621    0.2590   -1.4670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6280    2.6309   -1.0306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9301    2.3557    0.5820 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0881    2.9353    1.1077 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7743    2.8782   -0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5537    0.7698    3.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4831    0.8745    0.4901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1827    1.9186    1.9675 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2199    0.0494    3.0571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0249   -2.0297    3.1112 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8829   -1.4083   -1.2272 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7745    0.2045   -1.2850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5429   -1.2491   -0.6555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1726    0.2188    1.5567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1118   -2.3150   -0.1737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8624   -2.0652    1.6260 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0390   -0.7280    1.3225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0697   -3.0320    1.3970 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6
  2  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  1  1
 24 26  1  0
 26 27  1  0
 27 28  2  0
 28 29  1  0
 29 30  2  0
 29 31  1  0
 31 32  1  6
 31 33  1  0
 33 34  1  0
 34 35  1  0
 35 36  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  1
 10 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
  3  2  1  0
 33 20  1  0
 13  7  1  0
 35  2  1  0
 17 10  1  0
 31 24  1  0
  1 37  1  0
  1 38  1  0
  1 39  1  0
  6 45  1  1
  5 43  1  0
  5 44  1  0
  4 41  1  0
  4 42  1  0
  3 40  1  1
 20 59  1  6
 21 60  1  0
 21 61  1  0
 22 62  1  1
 23 63  1  0
 25 64  1  0
 26 65  1  0
 26 66  1  0
 27 67  1  0
 28 68  1  0
 32 69  1  0
 32 70  1  0
 32 71  1  0
 33 72  1  1
 34 73  1  0
 34 74  1  0
 35 75  1  1
 36 76  1  0
  7 46  1  6
  8 47  1  0
  8 48  1  0
 11 49  1  0
 11 50  1  0
 11 51  1  0
 12 52  1  0
 12 53  1  0
 13 54  1  6
 17 55  1  1
 18 56  1  0
 18 57  1  0
 19 58  1  0
M  END


  Mrv1652309052219062D          

 36 41  0  0  1  0            999 V2000
    3.5330   -3.2587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8928   -2.5163    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.1731   -1.7404    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5218   -1.2340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8390   -1.6970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0683   -2.4895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5619   -3.1408    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7664   -2.9223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0493   -3.3302    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8308   -4.1258    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0122   -4.2283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8668   -3.7244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9699   -3.8579    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7513   -4.6534    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0343   -5.0614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1368   -5.8800    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2387   -4.8428    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7324   -5.4942    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0433   -6.2583    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9853   -1.5952    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2655   -0.8192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777   -0.6740    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.3580    0.1019    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6095   -1.3047    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.8898   -0.5288    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4216   -1.1595    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9534   -1.7902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6731   -2.5662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8610   -2.7114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5807   -3.4873    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3292   -2.0807    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0489   -2.8566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5171   -2.2259    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2368   -3.0018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4247   -3.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1444   -3.9229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  1  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 13 12  1  1  0  0  0
  7 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  1  0  0  0
 18 19  1  0  0  0  0
  3 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 24 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 20 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
  2 35  1  0  0  0  0
 35 36  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0216943

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12[C@H](CC[C@H]1[C@@H]1C[C@@H](O)[C@@]3(O)CC=CC(=O)[C@]3(C)[C@H]1C[C@H]2O)[C@@H]1CO[C@]2(C)C[C@H]1OC(=O)[C@H]2CO

> <INCHI_IDENTIFIER>
InChI=1S/C28H40O8/c1-25-11-20(36-24(33)19(25)12-29)15(13-35-25)17-7-6-16-14-9-23(32)28(34)8-4-5-21(30)27(28,3)18(14)10-22(31)26(16,17)2/h4-5,14-20,22-23,29,31-32,34H,6-13H2,1-3H3/t14-,15-,16-,17+,18-,19+,20+,22+,23+,25+,26-,27-,28-/m0/s1

> <INCHI_KEY>
NNBAESIGXWIEDH-RAYSIIHCSA-N

> <FORMULA>
C28H40O8

> <MOLECULAR_WEIGHT>
504.62

> <EXACT_MASS>
504.272318248

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
54.7549055138054

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,4S,5R,8R)-4-(hydroxymethyl)-5-methyl-8-[(1S,2R,7R,8R,10S,11S,14R,15S,16R)-7,8,16-trihydroxy-2,15-dimethyl-3-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-4-en-14-yl]-2,6-dioxabicyclo[3.3.1]nonan-3-one

> <JCHEM_LOGP>
0.5249265943333328

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.632058327374615

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.128355595027049

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3712070755822955

> <JCHEM_POLAR_SURFACE_AREA>
133.52

> <JCHEM_REFRACTIVITY>
130.28479999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4S,5R,8R)-4-(hydroxymethyl)-5-methyl-8-[(1S,2R,7R,8R,10S,11S,14R,15S,16R)-7,8,16-trihydroxy-2,15-dimethyl-3-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-4-en-14-yl]-2,6-dioxabicyclo[3.3.1]nonan-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       6.595  -6.083   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.267  -4.697   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.790  -3.249   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.574  -2.304   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.299  -3.168   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.727  -4.647   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.782  -5.863   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.297  -5.455   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       1.959  -6.216   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.551  -7.701   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.023  -7.893   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.485  -6.952   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.544  -7.201   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       5.136  -8.686   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       3.797  -9.448   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.989 -10.976   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       2.312  -9.040   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.367 -10.256   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       1.947 -11.682   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.306  -2.978   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       9.829  -1.529   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.345  -1.258   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.868   0.190   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      12.338  -2.436   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      12.861  -0.987   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      13.854  -2.164   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.846  -3.342   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.323  -4.790   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      12.807  -5.061   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      12.284  -6.510   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      11.814  -3.884   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.291  -5.332   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.299  -4.155   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.775  -5.603   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       8.259  -5.874   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       7.736  -7.323   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6   35                                             
CONECT    3    2    4   20                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    2    7                                                  
CONECT    7    6    8   13                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   17                                             
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12    7   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   10   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20    3   21   33                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26   31                                             
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   24   32   33                                             
CONECT   32   31                                                            
CONECT   33   31   20   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34    2   36                                                  
CONECT   36   35                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₀O₈

Average Mass

504.6200 Da

Monoisotopic Mass

504.27232 Da

IUPAC Name

(1R,4S,5R,8R)-4-(hydroxymethyl)-5-methyl-8-[(1S,2R,7R,8R,10S,11S,14R,15S,16R)-7,8,16-trihydroxy-2,15-dimethyl-3-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-4-en-14-yl]-2,6-dioxabicyclo[3.3.1]nonan-3-one

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@]12[C@H](CC[C@H]1[C@@H]1C[C@@H](O)[C@@]3(O)CC=CC(=O)[C@]3(C)[C@H]1C[C@H]2O)[C@@H]1CO[C@]2(C)C[C@H]1OC(=O)[C@H]2CO

InChI Identifier

InChI=1S/C28H40O8/c1-25-11-20(36-24(33)19(25)12-29)15(13-35-25)17-7-6-16-14-9-23(32)28(34)8-4-5-21(30)27(28,3)18(14)10-22(31)26(16,17)2/h4-5,14-20,22-23,29,31-32,34H,6-13H2,1-3H3/t14-,15-,16-,17+,18-,19+,20+,22+,23+,25+,26-,27-,28-/m0/s1

InChI Key

NNBAESIGXWIEDH-RAYSIIHCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Datura metel	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid lactones. These are sterol lipids containing a lactone moiety linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid lactones

Direct Parent

Steroid lactones

Alternative Parents

Substituents

Steroid lactone
Androstane-skeleton
12-hydroxysteroid
6-hydroxysteroid
5-hydroxysteroid
Hydroxysteroid
Oxosteroid
1-oxosteroid
Cyclohexenone
Delta valerolactone
Delta_valerolactone
Oxane
Cyclic alcohol
Tertiary alcohol
Carboxylic acid ester
Secondary alcohol
Ketone
Lactone
Organoheterocyclic compound
Oxacycle
Ether
Dialkyl ether
Carboxylic acid derivative
Polyol
Monocarboxylic acid or derivatives
Organic oxygen compound
Primary alcohol
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.52	ChemAxon
pKa (Strongest Acidic)	13.13	ChemAxon
pKa (Strongest Basic)	-0.37	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	133.52 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	130.28 m³·mol⁻¹	ChemAxon
Polarizability	54.75 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101862359

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one (NP0216943)

MOL for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

3D MOL for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

3D SDF for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

3D-SDF for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

PDB for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

3D PDB for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

SMILES for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

INCHI for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

Structure for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)

3D Structure for NP0216943 ((1r,4s,5r,8r)-8-[(1r,3as,3bs,5r,5ar,9ar,9bs,11r,11as)-5,5a,11-trihydroxy-9a,11a-dimethyl-9-oxo-1h,2h,3h,3ah,3bh,4h,5h,6h,9bh,10h,11h-cyclopenta[a]phenanthren-1-yl]-4-(hydroxymethyl)-5-methyl-2,6-dioxabicyclo[3.3.1]nonan-3-one)