NP-MRD: Showing NP-Card for (2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal (NP0216644)

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Record Information

Version

2.0

Created at

2022-09-05 16:41:25 UTC

Updated at

2022-09-05 16:41:25 UTC

NP-MRD ID

NP0216644

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal

Description

Citreoviral, also known as 5-epi-citreoviral, belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms. (2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal is found in Penicillium citreoviride. (2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal was first documented in 2004 (PMID: 15199570). Based on a literature review very few articles have been published on Citreoviral (PMID: 19785443).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 33  0  0  0  0  0  0  0  0999 V2000
   -3.0617    0.0366   -0.7174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6366    0.2198    0.6598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6165    0.7445    1.6317 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3052    0.9257    2.8453 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4185   -0.0712    1.0331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4457   -0.5927    0.0651 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8594   -1.8462   -0.6480 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6753   -0.9730    0.8489 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8109   -0.6313    0.1758 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.9527   -0.6061    1.1690 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4587    0.7908   -0.2708 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4190    1.2768   -1.3049 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3471    1.5900    0.8383 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0748    0.4812   -0.8689 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3106    0.0547   -2.1513 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8204   -0.8025   -0.7268 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7003    0.9226   -1.0311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3179   -0.0543   -1.4882 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6004    0.9754    1.3119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1986    0.1049    2.1003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2272   -2.7452   -0.3764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8852   -2.1754   -0.4634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6174   -1.7107   -1.7436 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0255   -1.2337   -0.7038 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7931    0.0406    0.8371 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2584   -1.6563    1.3341 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5405   -0.2068    2.1210 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1308    1.9883   -0.8235 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0640    0.4362   -1.6854 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9334    1.7915   -2.1502 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2360    1.7502    1.1990 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5471    1.4057   -0.8025 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2271   -0.2297   -2.2818 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  6  1  0
  6  7  1  0
  6  5  1  1
  5  2  2  0
  2  1  1  0
  2  3  1  0
  3  4  2  0
  6 14  1  0
 14 15  1  0
 14 11  1  0
 11 12  1  0
 11 13  1  1
 11  9  1  0
 10 25  1  0
 10 26  1  0
 10 27  1  0
  9 24  1  6
  7 21  1  0
  7 22  1  0
  7 23  1  0
  5 20  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  3 19  1  0
 14 32  1  6
 15 33  1  0
 12 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
M  END


  Mrv1652309052218412D          

 15 15  0  0  1  0            999 V2000
    2.1817    0.7712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9268    1.5559    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4788    2.1689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2858    1.9974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1198    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5678    1.1143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0157    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2352    0.6294    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9803   -0.1553    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4652   -0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1553   -0.1553    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.2415   -0.9757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6517   -0.3268    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0997    0.6294    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8843    0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  2  5  2  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  1  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  6  0  0  0
 11 14  1  0  0  0  0
  6 14  1  0  0  0  0
 14 15  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0216644

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1O[C@@](C)(\C=C(/C)C=O)[C@H](O)[C@@]1(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C11H18O4/c1-7(6-12)5-10(3)9(13)11(4,14)8(2)15-10/h5-6,8-9,13-14H,1-4H3/b7-5+/t8-,9+,10+,11+/m1/s1

> <INCHI_KEY>
YDZGIHHZMNNFMM-NWUITSLLSA-N

> <FORMULA>
C11H18O4

> <MOLECULAR_WEIGHT>
214.261

> <EXACT_MASS>
214.12050906

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
22.448628552844546

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E)-3-[(2S,3R,4R,5R)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal

> <JCHEM_LOGP>
0.12417247533333386

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.027722737883003

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.600887539974877

> <JCHEM_PKA_STRONGEST_BASIC>
-3.662281523430699

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
56.2439

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-3-[(2S,3R,4R,5R)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       4.073   1.440   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.597   2.904   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.627   4.049   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       6.133   3.729   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.090   3.224   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.060   2.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.029   3.224   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.306   1.175   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.830  -0.290   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.735  -1.536   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.290  -0.290   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.451  -1.821   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.217  -0.610   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -0.186   1.175   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -1.651   1.651   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    5                                                  
CONECT    3    2    4                                                       
CONECT    4    3                                                            
CONECT    5    2    6                                                       
CONECT    6    5    7    8   14                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13   14                                             
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14   11    6   15                                                  
CONECT   15   14                                                            
MASTER        0    0    0    0    0    0    0    0   15    0   30    0
END

View in JSmol

Synonyms

Value	Source
5-Epi-citreoviral	MeSH

Chemical Formula

C₁₁H₁₈O₄

Average Mass

214.2610 Da

Monoisotopic Mass

214.12051 Da

IUPAC Name

(2E)-3-[(2S,3R,4R,5R)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal

Traditional Name

(2E)-3-[(2S,3R,4R,5R)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal

CAS Registry Number

Not Available

SMILES

C[C@H]1O[C@@](C)(\C=C(/C)C=O)[C@H](O)[C@@]1(C)O

InChI Identifier

InChI=1S/C11H18O4/c1-7(6-12)5-10(3)9(13)11(4,14)8(2)15-10/h5-6,8-9,13-14H,1-4H3/b7-5+/t8-,9+,10+,11+/m1/s1

InChI Key

YDZGIHHZMNNFMM-NWUITSLLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium citreoviride	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oxolanes. These are organic compounds containing an oxolane (tetrahydrofuran) ring, which is a saturated aliphatic five-member ring containing one oxygen and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Oxolanes

Sub Class

Not Available

Direct Parent

Oxolanes

Alternative Parents

Substituents

Alpha,beta-unsaturated aldehyde
Enal
Oxolane
Tertiary alcohol
Secondary alcohol
1,2-diol
Ether
Dialkyl ether
Oxacycle
Aldehyde
Organooxygen compound
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.12	ChemAxon
pKa (Strongest Acidic)	12.6	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	56.24 m³·mol⁻¹	ChemAxon
Polarizability	22.45 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4946426

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6442339

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Funk TW: Enantioselective synthesis of 5-epi-citreoviral using ruthenium-catalyzed asymmetric ring-closing metathesis. Org Lett. 2009 Nov 5;11(21):4998-5001. doi: 10.1021/ol901853t. [PubMed:19785443 ]
Murata Y, Kamino T, Aoki T, Hosokawa S, Kobayashi S: Highly efficient total synthesis of (+)-citreoviral. Angew Chem Int Ed Engl. 2004 Jun 14;43(24):3175-7. doi: 10.1002/anie.200454212. [PubMed:15199570 ]
LOTUS database [Link]

Showing NP-Card for (2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal (NP0216644)

MOL for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

3D MOL for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

3D SDF for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

3D-SDF for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

PDB for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

3D PDB for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

SMILES for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

INCHI for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

Structure for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)

3D Structure for NP0216644 ((2e)-3-[(2s,3r,4r,5r)-3,4-dihydroxy-2,4,5-trimethyloxolan-2-yl]-2-methylprop-2-enal)