NP-MRD: Showing NP-Card for (2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal (NP0216274)

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Record Information

Version

2.0

Created at

2022-09-05 16:09:56 UTC

Updated at

2022-09-05 16:09:56 UTC

NP-MRD ID

NP0216274

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal

Description

Secomanoalide belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. (2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal is found in Chromodoris willani, Hyrtios erectus and Luffariella variabilis. (2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal was first documented in 2006 (PMID: 16753777). Based on a literature review a small amount of articles have been published on Secomanoalide (PMID: 24825299) (PMID: 19652420) (PMID: 17952508).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052218092D          

 30 31  0  0  0  0            999 V2000
   -4.1801    5.7134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8946    6.1259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091    5.7134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8946    4.4759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8946    3.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801    3.2384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091    3.2384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091    2.4134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3235    2.0009    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3235    1.1759    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091   -0.0616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0380    0.7634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0380   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.3400   -2.5687    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.1650   -2.5687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.2045   -1.5291    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3235    6.1259    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309052218092D          

 30 31  0  0  0  0            999 V2000
   -4.1801    5.7134    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0216274

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C(CCC1=C(C)CCCC1(C)C)=C/CC\C(C=O)=C\CC(O)C1=CC(=O)OC1O

> <INCHI_IDENTIFIER>
InChI=1S/C25H36O5/c1-17(10-12-21-18(2)8-6-14-25(21,3)4)7-5-9-19(16-26)11-13-22(27)20-15-23(28)30-24(20)29/h7,11,15-16,22,24,27,29H,5-6,8-10,12-14H2,1-4H3/b17-7+,19-11-

> <INCHI_KEY>
KESXQHZIRZKRKH-QIAWSUABSA-N

> <FORMULA>
C25H36O5

> <MOLECULAR_WEIGHT>
416.558

> <EXACT_MASS>
416.256274259

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
66

> <JCHEM_AVERAGE_POLARIZABILITY>
46.94803515028764

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2Z,5E)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2,5-dihydrofuran-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal

> <JCHEM_LOGP>
4.452999938666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.73218880558421

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.540385321118596

> <JCHEM_PKA_STRONGEST_BASIC>
-3.08327613192814

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
120.97989999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,5E)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2H-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -7.803  10.665   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.137  11.435   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -10.470  10.665   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -10.470   9.125   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -9.137   8.355   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -9.137   6.815   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -7.803   6.045   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -10.470   6.045   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -10.470   4.505   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -11.804   3.735   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -11.804   2.195   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -10.470   1.425   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0     -10.470  -0.115   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0     -13.138   1.425   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -13.138  -0.115   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -14.471  -0.885   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0     -15.805  -0.115   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0     -14.471  -2.425   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -13.225  -3.330   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -13.701  -4.795   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0     -12.796  -6.041   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0     -15.241  -4.795   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0     -15.717  -3.330   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0     -17.182  -2.854   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0     -11.804  11.435   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0     -12.331   9.988   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0     -13.321  11.702   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -11.804  12.975   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -10.470  13.745   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -9.137  12.975   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4   25                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   14                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   11   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   18   24                                                  
CONECT   24   23                                                            
CONECT   25    3   26   27   28                                             
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   25   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29    2                                                       
MASTER        0    0    0    0    0    0    0    0   30    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₆O₅

Average Mass

416.5580 Da

Monoisotopic Mass

416.25627 Da

IUPAC Name

(2Z,5E)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2,5-dihydrofuran-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal

Traditional Name

(2Z,5E)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2H-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal

CAS Registry Number

Not Available

SMILES

C\C(CCC1=C(C)CCCC1(C)C)=C/CC\C(C=O)=C\CC(O)C1=CC(=O)OC1O

InChI Identifier

InChI=1S/C25H36O5/c1-17(10-12-21-18(2)8-6-14-25(21,3)4)7-5-9-19(16-26)11-13-22(27)20-15-23(28)30-24(20)29/h7,11,15-16,22,24,27,29H,5-6,8-10,12-14H2,1-4H3/b17-7+,19-11-

InChI Key

KESXQHZIRZKRKH-QIAWSUABSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chromodoris willani	LOTUS Database	35616633
Hyrtios erectus	LOTUS Database	35616633
Luffariella variabilis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Diterpenoid
Diterpene lactone
Long chain fatty alcohol
Fatty alcohol
Fatty acyl
2-furanone
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Enal
Dihydrofuran
Alpha,beta-unsaturated aldehyde
Secondary alcohol
Lactone
Hemiacetal
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aldehyde
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.45	ChemAxon
pKa (Strongest Acidic)	5.54	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	120.98 m³·mol⁻¹	ChemAxon
Polarizability	46.95 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

20125639

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6378022

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Majik MS, Shirodkar D, Rodrigues C, D'Souza L, Tilvi S: Evaluation of single and joint effect of metabolites isolated from marine sponges, Fasciospongia cavernosa and Axinella donnani on antimicrobial properties. Bioorg Med Chem Lett. 2014 Jul 1;24(13):2863-6. doi: 10.1016/j.bmcl.2014.04.097. Epub 2014 May 2. [PubMed:24825299 ]
Uddin MH, Otsuka M, Muroi T, Ono A, Hanif N, Matsuda S, Higa T, Tanaka J: Deoxymanoalides from the nudibranch Chromodoris willani. Chem Pharm Bull (Tokyo). 2009 Aug;57(8):885-7. doi: 10.1248/cpb.57.885. [PubMed:19652420 ]
Skindersoe ME, Ettinger-Epstein P, Rasmussen TB, Bjarnsholt T, de Nys R, Givskov M: Quorum sensing antagonism from marine organisms. Mar Biotechnol (NY). 2008 Jan-Feb;10(1):56-63. doi: 10.1007/s10126-007-9036-y. Epub 2007 Oct 20. [PubMed:17952508 ]
Zhou GX, Molinski TF: Manoalide derivatives from a sponge, Luffariella sp. J Asian Nat Prod Res. 2006 Jan-Mar;8(1-2):15-20. doi: 10.1080/10286020500246022. [PubMed:16753777 ]
LOTUS database [Link]

Showing NP-Card for (2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal (NP0216274)

MOL for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

3D MOL for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

3D SDF for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

3D-SDF for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

PDB for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

3D PDB for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

SMILES for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

INCHI for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

Structure for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)

3D Structure for NP0216274 ((2z,5e)-2-[3-hydroxy-3-(2-hydroxy-5-oxo-2h-furan-3-yl)propylidene]-6-methyl-8-(2,6,6-trimethylcyclohex-1-en-1-yl)oct-5-enal)