NP-MRD: Showing NP-Card for 4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide (NP0216045)

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Record Information

Version

2.0

Created at

2022-09-05 15:51:36 UTC

Updated at

2022-09-05 15:51:36 UTC

NP-MRD ID

NP0216045

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide

Description

4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide is found in Agelas cervicornis.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 33  0  0  0  0  0  0  0  0999 V2000
   -5.6895    2.0585   -2.4559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9229    1.3561   -1.7456 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0150    0.7984   -0.9849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1899   -0.1663    0.0168 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0477   -0.4866    0.5652 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9683   -1.4175    1.5765 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9692    0.2836   -0.0656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6852    0.2195    0.2333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1110   -0.6438    1.2614 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9781   -1.9536    0.7489 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2603   -0.2167    1.7137 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2267   -0.2092    0.6673 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5770    0.1610    0.8789 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9141    0.4927    2.0444 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5661    0.1682   -0.1943 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8926    0.5150   -0.0650 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5056    0.3972   -1.2985 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3361    0.7430   -1.7376 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.5136   -0.0297   -2.1746 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8246   -0.3514   -4.0186 Br  0  0  0  0  0  0  0  0  0  0  0  0
    3.3573   -0.1586   -1.4804 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6234    1.0838   -1.0403 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9527   -2.4168    1.4439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9998    0.8598   -0.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8070   -0.7271    2.1207 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4854   -1.9647   -0.0984 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6142   -0.8600    2.5288 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1512    0.8393    2.0967 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9239   -0.4886   -0.2930 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4241    0.8362    0.8346 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4679   -0.4714   -1.9404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1104    1.7498   -1.6614 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 19 21  1  0
  9  8  1  0
  8  7  2  0
  7 22  1  0
 22  3  1  0
  3  2  2  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
 21 15  1  0
  5  7  1  0
 10 26  1  0
  9 25  1  1
 11 27  1  0
 11 28  1  0
 12 29  1  0
 16 30  1  0
 21 31  1  0
  8 24  1  0
 22 32  1  0
  2  1  1  0
  6 23  1  0
M  END


  Mrv1652309052217512D          

 21 22  0  0  0  0            999 V2000
   -0.2249    0.7663    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2600    0.0988    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0850    0.0988    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3400   -0.6858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1246   -0.9407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6725   -1.1707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6725   -1.9957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3870   -2.4082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3870   -3.2332    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1015   -1.9957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8159   -2.4082    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.5304   -1.9957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5304   -1.1707    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2449   -2.4082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9986   -2.0727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5506   -2.6857    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3711   -2.5995    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    5.1381   -3.4002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4736   -4.1539    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.3311   -3.2287    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0051   -0.6858    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 14 20  1  0  0  0  0
  6 21  1  0  0  0  0
  2 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0216045

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC(CNC(=O)C1=CC(Br)=C(Br)N1)C=C1NC(=N)N=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C11H11Br2N5O3/c12-5-2-7(16-8(5)13)9(20)15-3-4(19)1-6-10(21)18-11(14)17-6/h1-2,4,16,19H,3H2,(H,15,20)(H3,14,17,18,21)

> <INCHI_KEY>
AOPZOWUSQQHDPT-UHFFFAOYSA-N

> <FORMULA>
C11H11Br2N5O3

> <MOLECULAR_WEIGHT>
421.049

> <EXACT_MASS>
418.922865

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
32.926738750560226

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
4,5-dibromo-N-[2-hydroxy-3-(4-hydroxy-2-imino-2,5-dihydro-1H-imidazol-5-ylidene)propyl]-1H-pyrrole-2-carboxamide

> <JCHEM_LOGP>
-1.73358840132259

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
10.146964565501452

> <JCHEM_PKA_STRONGEST_ACIDIC>
-3.055185079941814

> <JCHEM_PKA_STRONGEST_BASIC>
16.85437578463488

> <JCHEM_POLAR_SURFACE_AREA>
133.59

> <JCHEM_REFRACTIVITY>
93.79910000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
4,5-dibromo-N-[2-hydroxy-3-(5-hydroxy-2-imino-3H-imidazol-4-ylidene)propyl]-1H-pyrrole-2-carboxamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  N   UNK     0      -0.420   1.430   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       0.485   0.184   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       2.025   0.184   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       2.501  -1.280   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       3.966  -1.756   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.255  -2.185   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.255  -3.725   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.589  -4.495   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.589  -6.035   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.923  -3.725   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       5.256  -4.495   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       6.590  -3.725   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.590  -2.185   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       7.924  -4.495   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.331  -3.869   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.361  -5.013   0.000  0.00  0.00           C+0
HETATM   17 Br   UNK     0      11.893  -4.852   0.000  0.00  0.00          Br+0
HETATM   18  C   UNK     0       9.591  -6.347   0.000  0.00  0.00           C+0
HETATM   19 Br   UNK     0      10.217  -7.754   0.000  0.00  0.00          Br+0
HETATM   20  N   UNK     0       8.085  -6.027   0.000  0.00  0.00           N+0
HETATM   21  N   UNK     0       0.010  -1.280   0.000  0.00  0.00           N+0
CONECT    1    2                                                            
CONECT    2    1    3   21                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   21                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   14                                                       
CONECT   21    6    2                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   44    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₁H₁₁Br₂N₅O₃

Average Mass

421.0490 Da

Monoisotopic Mass

418.92286 Da

IUPAC Name

4,5-dibromo-N-[2-hydroxy-3-(4-hydroxy-2-imino-2,5-dihydro-1H-imidazol-5-ylidene)propyl]-1H-pyrrole-2-carboxamide

Traditional Name

4,5-dibromo-N-[2-hydroxy-3-(5-hydroxy-2-imino-3H-imidazol-4-ylidene)propyl]-1H-pyrrole-2-carboxamide

CAS Registry Number

Not Available

SMILES

OC(CNC(=O)C1=CC(Br)=C(Br)N1)C=C1NC(=N)N=C1O

InChI Identifier

InChI=1S/C11H11Br2N5O3/c12-5-2-7(16-8(5)13)9(20)15-3-4(19)1-6-10(21)18-11(14)17-6/h1-2,4,16,19H,3H2,(H,15,20)(H3,14,17,18,21)

InChI Key

AOPZOWUSQQHDPT-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Agelas cervicornis	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.7	ChemAxon
pKa (Strongest Acidic)	-3.1	ChemAxon
pKa (Strongest Basic)	16.85	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	133.59 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	93.8 m³·mol⁻¹	ChemAxon
Polarizability	32.93 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide (NP0216045)

MOL for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

3D MOL for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

3D SDF for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

3D-SDF for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

PDB for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

3D PDB for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

SMILES for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

INCHI for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

Structure for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)

3D Structure for NP0216045 (4,5-dibromo-n-[2-hydroxy-3-(5-hydroxy-2-imino-3h-imidazol-4-ylidene)propyl]-1h-pyrrole-2-carboxamide)