NP-MRD: Showing NP-Card for (1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one (NP0215753)

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Record Information

Version

2.0

Created at

2022-09-05 15:28:24 UTC

Updated at

2022-09-05 15:28:25 UTC

NP-MRD ID

NP0215753

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one

Description

(1S,2S,9R,10R,11R,14R,15S)-9-hydroxy-2,15-dimethyl-14-[(2S,3R,5R)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadeca-3,6-dien-5-one belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups. (1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one is found in Petunia hybrida. Based on a literature review very few articles have been published on (1S,2S,9R,10R,11R,14R,15S)-9-hydroxy-2,15-dimethyl-14-[(2S,3R,5R)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadeca-3,6-dien-5-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052217282D          

 33 36  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652309052217282D          

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  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  1  0  0  0
  6  8  1  1  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
  9 12  1  0  0  0  0
 13  2  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  1  0  0  0
 17 16  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 13 21  1  0  0  0  0
 16 21  1  0  0  0  0
 21 22  1  1  0  0  0
 18 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 17 32  1  0  0  0  0
 32 33  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0215753

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]([C@H](O)C[C@@](C)(O)C(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@H](O)CC4=CC(=O)C=C[C@@]4(C)[C@H]3CC[C@@]12C

> <INCHI_IDENTIFIER>
InChI=1S/C28H44O5/c1-16(23(31)15-28(6,33)25(2,3)32)19-7-8-20-24-21(10-12-27(19,20)5)26(4)11-9-18(29)13-17(26)14-22(24)30/h9,11,13,16,19-24,30-33H,7-8,10,12,14-15H2,1-6H3/t16-,19+,20+,21-,22+,23+,24+,26+,27-,28+/m0/s1

> <INCHI_KEY>
ZNOYEDHMEIFYLB-MQXWAILBSA-N

> <FORMULA>
C28H44O5

> <MOLECULAR_WEIGHT>
460.655

> <EXACT_MASS>
460.318874517

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
77

> <JCHEM_AVERAGE_POLARIZABILITY>
52.0757203759522

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,9R,10R,11R,14R,15S)-9-hydroxy-2,15-dimethyl-14-[(2S,3R,5R)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-3,6-dien-5-one

> <JCHEM_LOGP>
2.7221932446666655

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.707230637016519

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.614203522209305

> <JCHEM_PKA_STRONGEST_BASIC>
-0.6107440668293215

> <JCHEM_POLAR_SURFACE_AREA>
97.99

> <JCHEM_REFRACTIVITY>
131.63559999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,9R,10R,11R,14R,15S)-9-hydroxy-2,15-dimethyl-14-[(2S,3R,5R)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadeca-3,6-dien-5-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       9.302  -2.907   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.882  -1.480   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.407  -1.269   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      11.988   0.157   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      12.353  -2.485   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      13.878  -2.275   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      13.667  -0.749   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      14.089  -3.800   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      15.404  -2.064   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      16.929  -1.853   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.193  -0.538   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      15.614  -3.589   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       8.937  -0.264   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.365   1.215   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.090   2.079   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.874   1.134   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.358   1.405   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.366   0.228   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.889  -1.221   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.405  -1.492   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.398  -0.314   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.069  -1.700   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.850   0.499   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.373  -0.949   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.857  -0.678   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       0.341  -0.407   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.182   1.041   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -1.698   1.312   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       0.810   2.218   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.326   1.947   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.319   3.125   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       4.835   2.854   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.828   4.031   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   13                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    6   10   11   12                                             
CONECT   10    9                                                            
CONECT   11    9                                                            
CONECT   12    9                                                            
CONECT   13    2   14   21                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18   32                                                  
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   13   16   22                                             
CONECT   22   21                                                            
CONECT   23   18   24   25   30                                             
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   23   31                                                  
CONECT   31   30   32                                                       
CONECT   32   31   17   33                                                  
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₄₄O₅

Average Mass

460.6550 Da

Monoisotopic Mass

460.31887 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H]([C@H](O)C[C@@](C)(O)C(C)(C)O)[C@H]1CC[C@@H]2[C@H]3[C@H](O)CC4=CC(=O)C=C[C@@]4(C)[C@H]3CC[C@@]12C

InChI Identifier

InChI=1S/C28H44O5/c1-16(23(31)15-28(6,33)25(2,3)32)19-7-8-20-24-21(10-12-27(19,20)5)26(4)11-9-18(29)13-17(26)14-22(24)30/h9,11,13,16,19-24,30-33H,7-8,10,12,14-15H2,1-6H3/t16-,19+,20+,21-,22+,23+,24+,26+,27-,28+/m0/s1

InChI Key

ZNOYEDHMEIFYLB-MQXWAILBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Petunia hybrida	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tetrahydroxy bile acids, alcohols and derivatives. These are prenol lipids structurally characterized by a bile acid or alcohol which bears four hydroxyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Bile acids, alcohols and derivatives

Direct Parent

Tetrahydroxy bile acids, alcohols and derivatives

Alternative Parents

Substituents

Ergosterol-skeleton
Ergostane-skeleton
Tetrahydroxy bile acid, alcohol, or derivatives
25-hydroxysteroid
24-hydroxysteroid
22-hydroxysteroid
3-oxo-delta-1,4-steroid
3-oxosteroid
7-hydroxysteroid
Hydroxysteroid
Oxosteroid
Delta-1,4-steroid
Tertiary alcohol
Cyclic alcohol
Ketone
Secondary alcohol
Cyclic ketone
Polyol
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Alcohol
Organic oxide
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162896998

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one (NP0215753)

MOL for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

3D MOL for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

3D SDF for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

3D-SDF for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

PDB for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

3D PDB for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

SMILES for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

INCHI for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

Structure for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)

3D Structure for NP0215753 ((1r,3ar,3br,4r,9as,9bs,11as)-4-hydroxy-9a,11a-dimethyl-1-[(2s,3r,5r)-3,5,6-trihydroxy-5,6-dimethylheptan-2-yl]-1h,2h,3h,3ah,3bh,4h,5h,9bh,10h,11h-cyclopenta[a]phenanthren-7-one)