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Record Information
Version2.0
Created at2022-09-05 15:16:07 UTC
Updated at2022-09-05 15:16:07 UTC
NP-MRD IDNP0215598
Secondary Accession NumbersNone
Natural Product Identification
Common Namemethyl (2e)-2-[(1r)-1-hydroxy-2-oxopropyl]tridec-2-enoate
DescriptionSecokotomolide belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms. methyl (2e)-2-[(1r)-1-hydroxy-2-oxopropyl]tridec-2-enoate is found in Cinnamomum kotoense. methyl (2e)-2-[(1r)-1-hydroxy-2-oxopropyl]tridec-2-enoate was first documented in 2005 (PMID: 16180806). Based on a literature review a small amount of articles have been published on Secokotomolide (PMID: 33062137) (PMID: 16792412) (PMID: 20198535) (PMID: 17958434).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC17H30O4
Average Mass298.4230 Da
Monoisotopic Mass298.21441 Da
IUPAC Namemethyl (2E)-2-[(1R)-1-hydroxy-2-oxopropyl]tridec-2-enoate
Traditional Namemethyl (2E)-2-[(1R)-1-hydroxy-2-oxopropyl]tridec-2-enoate
CAS Registry NumberNot Available
SMILES
CCCCCCCCCC\C=C(/[C@@H](O)C(C)=O)C(=O)OC
InChI Identifier
InChI=1S/C17H30O4/c1-4-5-6-7-8-9-10-11-12-13-15(17(20)21-3)16(19)14(2)18/h13,16,19H,4-12H2,1-3H3/b15-13+/t16-/m0/s1
InChI KeyBEYWPGROMZUINL-MDJJKAFGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cinnamomum kotoenseLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty alcohols. These are fatty alcohols that have an aliphatic tail of 13 to 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohols
Direct ParentLong-chain fatty alcohols
Alternative Parents
Substituents
  • Long chain fatty alcohol
  • Gamma-keto acid
  • Beta-hydroxy acid
  • Fatty acid ester
  • Acyloin
  • Hydroxy acid
  • Keto acid
  • Alpha-hydroxy ketone
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Methyl ester
  • Carboxylic acid ester
  • Secondary alcohol
  • Ketone
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Alcohol
  • Organic oxygen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.43ChemAxon
pKa (Strongest Acidic)10.89ChemAxon
pKa (Strongest Basic)-3.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area63.6 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity84.66 m³·mol⁻¹ChemAxon
Polarizability36.12 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9891084
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11716363
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Li J, Chen CY, Huang JY, Wang L, Xu Z, Kang W, Lin MH, Wang HD: Isokotomolide A from Cinnamomum kotoense Induce Melanoma Autophagy and Apoptosis In Vivo and In Vitro. Oxid Med Cell Longev. 2020 Sep 26;2020:3425147. doi: 10.1155/2020/3425147. eCollection 2020. [PubMed:33062137 ]
  2. Chen CH, Lo WL, Liu YC, Chen CY: Chemical and cytotoxic constituents from the leaves of Cinnamomum kotoense. J Nat Prod. 2006 Jun;69(6):927-33. doi: 10.1021/np060107l. [PubMed:16792412 ]
  3. Cheng MJ, Wang TA, Lee SJ, Chen IS: A new butanolide and a new secobutanolide from Litsea lii var. nunkao-tahangensis. Nat Prod Res. 2010 Apr;24(7):647-56. doi: 10.1080/14786410903098277. [PubMed:20198535 ]
  4. Lee SI, Hwang GS, Shin SC, Lee TG, Jo RH, Ryu DH: A highly E-stereoselective approach to beta-iodo Morita-Baylis-Hillman esters: synthesis of secokotomolide A. Org Lett. 2007 Nov 22;9(24):5087-9. doi: 10.1021/ol702134w. Epub 2007 Oct 25. [PubMed:17958434 ]
  5. Chen FC, Peng CF, Tsai IL, Chen IS: Antitubercular constituents from the stem wood of Cinnamomum kotoense. J Nat Prod. 2005 Sep;68(9):1318-23. doi: 10.1021/np0580210. [PubMed:16180806 ]
  6. LOTUS database [Link]