NP-MRD: Showing NP-Card for 2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol (NP0215259)

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Record Information

Version

2.0

Created at

2022-09-05 14:49:03 UTC

Updated at

2022-09-05 14:49:03 UTC

NP-MRD ID

NP0215259

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol

Description

2-(Hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol. 2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol is found in Bidens campylotheca. 2-(Hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241515492D          

 26 26  0  0  0  0            999 V2000
    0.7145   11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  3  0  0  0  0
  5  6  1  0  0  0  0
  6  7  3  0  0  0  0
  7  8  1  0  0  0  0
  8  9  3  0  0  0  0
  9 10  1  0  0  0  0
 10 11  3  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END

     RDKit          3D

 46 46  0  0  0  0  0  0  0  0999 V2000
    9.9745   -0.1232    1.8891 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8046   -0.3798    0.6871 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2173   -0.5633   -0.4816 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7936   -0.5262   -0.6492 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5834   -0.4774   -0.7825 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1824   -0.4014   -0.9481 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9831   -0.3170   -1.0927 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5796   -0.1959   -1.2722 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3809   -0.0759   -1.4389 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9878    0.0745   -1.6541 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2029    0.2086   -1.8589 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6317    0.3747   -2.1297 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.8022    1.2777   -3.3571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1269    2.4664   -3.0481 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1890    1.0004   -1.0082 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2120    0.2521   -0.4407 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9664   -0.0247    0.9041 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7824   -1.0708    1.3307 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8982   -1.1050    2.8414 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7167   -2.1605    3.1913 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1113   -1.1058    0.6502 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.0888   -1.6901    1.4594 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5943    0.2654    0.2293 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.0589    0.9551    1.3614 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5250    1.0304   -0.4880 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2905    2.2374    0.1739 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4587   -0.4623    2.8187 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0169   -0.7029    1.7798 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6845    0.9432    1.8983 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.8738   -0.4074    0.8141 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8456   -0.7493   -1.3462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1092   -0.5896   -2.3484 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4025    0.7678   -4.2358 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8459    1.5374   -3.5260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1845    2.6134   -2.0564 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3362   -0.6818   -1.0347 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2341   -2.0135    1.0461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2559   -0.1355    3.2370 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8897   -1.2798    3.2695 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4954   -1.9081    3.7176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0719   -1.7298   -0.2791 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9615   -1.3736    1.0988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4744    0.1014   -0.4391 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2934    0.3068    2.0464 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7949    1.1937   -1.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8203    2.0002    1.0225 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  3  0
  5  6  1  0
  6  7  3  0
  7  8  1  0
  8  9  3  0
  9 10  1  0
 10 11  3  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 12 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 18 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 25 16  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  3 31  1  0
 12 32  1  6
 13 33  1  0
 13 34  1  0
 14 35  1  0
 16 36  1  6
 18 37  1  6
 19 38  1  0
 19 39  1  0
 20 40  1  0
 21 41  1  6
 22 42  1  0
 23 43  1  6
 24 44  1  0
 25 45  1  6
 26 46  1  0
M  END


  Mrv1533004241515492D          

 26 26  0  0  0  0            999 V2000
    0.7145   11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    8.2500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  3  0  0  0  0
  5  6  1  0  0  0  0
  6  7  3  0  0  0  0
  7  8  1  0  0  0  0
  8  9  3  0  0  0  0
  9 10  1  0  0  0  0
 10 11  3  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0215259

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC=CC#CC#CC#CC#CC(CO)OC1OC(CO)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C19H20O7/c1-2-3-4-5-6-7-8-9-10-11-14(12-20)25-19-18(24)17(23)16(22)15(13-21)26-19/h2-3,14-24H,12-13H2,1H3

> <INCHI_KEY>
NDGAURXEUHTKRL-UHFFFAOYSA-N

> <FORMULA>
C19H20O7

> <MOLECULAR_WEIGHT>
360.362

> <EXACT_MASS>
360.120902984

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
38.75755663315073

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol

> <ALOGPS_LOGP>
1.24

> <JCHEM_LOGP>
0.0935131403333333

> <ALOGPS_LOGS>
-3.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.1641194526551

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.204667069456168

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810840744462226

> <JCHEM_POLAR_SURFACE_AREA>
119.61000000000001

> <JCHEM_REFRACTIVITY>
95.72690000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.18e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0       1.334  20.790   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  19.250   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  18.480   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  16.940   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  15.400   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000  13.860   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  12.320   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  10.780   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   9.240   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   7.700   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.667   4.620   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       2.667   1.540   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.335  -0.000   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17   25                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   16   26                                                  
CONECT   26   25                                                            
MASTER        0    0    0    0    0    0    0    0   26    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₀O₇

Average Mass

360.3620 Da

Monoisotopic Mass

360.12090 Da

IUPAC Name

2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol

Traditional Name

2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CC=CC#CC#CC#CC#CC(CO)OC1OC(CO)C(O)C(O)C1O

InChI Identifier

InChI=1S/C19H20O7/c1-2-3-4-5-6-7-8-9-10-11-14(12-20)25-19-18(24)17(23)16(22)15(13-21)26-19/h2-3,14-24H,12-13H2,1H3

InChI Key

NDGAURXEUHTKRL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bidens campylotheca	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acyl glycosides

Direct Parent

Fatty acyl glycosides of mono- and disaccharides

Alternative Parents

Substituents

Fatty acyl glycoside of mono- or disaccharide
Long chain fatty alcohol
Alkyl glycoside
Glycosyl compound
O-glycosyl compound
Fatty alcohol
Oxane
Monosaccharide
Secondary alcohol
Polyol
Oxacycle
Acetal
Organoheterocyclic compound
Primary alcohol
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.24	ALOGPS
logP	0.094	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	119.61 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	95.73 m³·mol⁻¹	ChemAxon
Polarizability	38.76 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol (NP0215259)

MOL for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

3D MOL for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

3D SDF for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

3D-SDF for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

PDB for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

3D PDB for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

SMILES for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

INCHI for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

Structure for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)

3D Structure for NP0215259 (2-(hydroxymethyl)-6-[(1-hydroxytridec-11-en-3,5,7,9-tetrayn-2-yl)oxy]oxane-3,4,5-triol)