NP-MRD: Showing NP-Card for methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate (NP0215112)

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Record Information

Version

2.0

Created at

2022-09-05 14:36:05 UTC

Updated at

2022-09-05 14:36:06 UTC

NP-MRD ID

NP0215112

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate

Description

Methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]Docosa-2(10),4,6,8,19-pentaene-20-carboxylate belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety. methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate is found in Neolamarckia cadamba. Based on a literature review very few articles have been published on methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]Docosa-2(10),4,6,8,19-pentaene-20-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052216362D          

 39 44  0  0  1  0            999 V2000
    3.5117   -2.9986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0162   -2.3390    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1972   -2.4384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8737   -3.1973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7017   -1.7788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8827   -1.8781    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3872   -1.2185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7106   -0.4595    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2151    0.2001    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    0.1007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9274   -0.6582    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7464   -0.7575    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0698   -1.5165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8888   -1.6158    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2419   -0.0979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0609   -0.1973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9184    0.6610    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4139    1.3206    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0994    0.7603    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7759    1.5193    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5296   -0.3602    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7364    0.4385    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1065    0.9713    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4897    0.7748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2224    0.3955    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.8431    0.9389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6241    0.6731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    4.1636   -0.6796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4886   -1.4379    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3102   -1.3631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9156   -1.9236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7037   -1.6797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8864   -0.8752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2811   -0.3146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4930   -0.5586    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3826   -0.4138    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8498   -1.0437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0252   -1.0198    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  6  0  0  0
 21  8  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
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 27 28  1  0  0  0  0
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 29 30  1  0  0  0  0
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 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 28 36  1  0  0  0  0
 31 36  1  0  0  0  0
 37 29  1  1  0  0  0
 25 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39  5  1  6  0  0  0
 21 39  1  0  0  0  0
M  END

     RDKit          3D

 73 78  0  0  0  0  0  0  0  0999 V2000
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    0.7958   -1.8269    2.1999 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5826   -1.0391    2.7508 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0088   -1.5230    1.0010 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.8350   -0.9146   -1.0001 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.7103   -0.2444   -0.1873 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8879    0.1399   -0.8354 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9080   -0.6113   -0.2854 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.2780   -0.9555   -0.1952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5107   -0.3438   -0.3597 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.0957    2.1245    0.1474 C   0  0  1  0  0  0  0  0  0  0  0  0
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    4.2781    0.6989    1.4735 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4618    1.3319    1.3882 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3063    1.8954    2.3188 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4770    2.4850    1.9124 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8390    2.5309    0.5786 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9882    1.9650   -0.3438 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8015    1.3635    0.0341 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5912   -0.3940   -0.1037 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4583    0.4217    0.3972 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0940   -0.2295    0.3181 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4619   -3.4917    3.6733 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0685   -4.4937    4.1943 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1933   -2.7445    4.7883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8624   -3.4511    1.0511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2813   -0.9937   -2.0099 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.2788    0.4408   -1.4659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2220   -1.7710   -0.9448 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2051   -1.4330    0.7935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7948   -0.3042   -1.3245 H   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5638   -1.1128   -3.2067 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.0789    1.8909    3.3726 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1680    2.9393    2.6149 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7724    3.0051    0.2915 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2384    1.9818   -1.3962 H   0  0  0  0  0  0  0  0  0  0  0  0
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  3  4  2  0
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 35 69  1  0
 24 59  1  0
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 22 57  1  6
 23 58  1  0
M  END


  Mrv1652309052216362D          

 39 44  0  0  1  0            999 V2000
    3.5117   -2.9986    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0162   -2.3390    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1972   -2.4384    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8737   -3.1973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7017   -1.7788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8827   -1.8781    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3872   -1.2185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7106   -0.4595    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2151    0.2001    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6039    0.1007    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9274   -0.6582    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7464   -0.7575    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0698   -1.5165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8888   -1.6158    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2419   -0.0979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.0609   -0.1973    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    3.8431    0.9389    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6241    0.6731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7843   -0.1362    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1636   -0.6796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4886   -1.4379    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.3102   -1.3631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9156   -1.9236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7037   -1.6797    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8864   -0.8752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2811   -0.3146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4930   -0.5586    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3826   -0.4138    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8498   -1.0437    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0252   -1.0198    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  6  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 10 19  1  0  0  0  0
 19 20  1  6  0  0  0
 21  8  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 28 36  1  0  0  0  0
 31 36  1  0  0  0  0
 37 29  1  1  0  0  0
 25 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39  5  1  6  0  0  0
 21 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0215112

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CO[C@@H](O[C@H]2O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]2O)[C@H]2[C@@H]1C[C@H]1N(CCC3=C1NC1=CC=CC=C31)C[C@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C27H34N2O10/c1-36-25(35)15-11-37-26(39-27-24(34)23(33)22(32)19(10-30)38-27)20-14(15)8-17-21-13(6-7-29(17)9-18(20)31)12-4-2-3-5-16(12)28-21/h2-5,11,14,17-20,22-24,26-28,30-34H,6-10H2,1H3/t14-,17-,18-,19+,20+,22+,23-,24+,26+,27-/m1/s1

> <INCHI_KEY>
HNZGKRAKJFZQAY-HBRFXUCJSA-N

> <FORMULA>
C27H34N2O10

> <MOLECULAR_WEIGHT>
546.573

> <EXACT_MASS>
546.221345303

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
56.16886147883848

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0^{2,10}.0^{4,9}.0^{16,21}]docosa-2(10),4,6,8,19-pentaene-20-carboxylate

> <JCHEM_LOGP>
-0.5240714719999994

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.174631169509954

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.20421168698272

> <JCHEM_PKA_STRONGEST_BASIC>
7.0221810505557825

> <JCHEM_POLAR_SURFACE_AREA>
174.17000000000002

> <JCHEM_REFRACTIVITY>
134.6165

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0^{2,10}.0^{4,9}.0^{16,21}]docosa-2(10),4,6,8,19-pentaene-20-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       6.555  -5.597   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.630  -4.366   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.101  -4.552   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.498  -5.968   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.176  -3.320   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.648  -3.506   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       0.723  -2.274   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.327  -0.858   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       0.402   0.373   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -1.127   0.188   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -1.731  -1.229   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -3.260  -1.414   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.864  -2.831   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -5.392  -3.016   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -4.185  -0.183   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -5.714  -0.368   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -3.581   1.234   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -4.506   2.465   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -2.052   1.419   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.448   2.836   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.855  -0.672   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.241   0.818   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.065   1.813   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.647   1.446   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       6.015   0.738   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0       7.174   1.753   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.632   1.256   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.931  -0.254   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.772  -1.269   0.000  0.00  0.00           C+0
HETATM   30  N   UNK     0       8.379  -2.684   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0       9.912  -2.544   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      11.042  -3.591   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.514  -3.135   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.855  -1.634   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      11.725  -0.587   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      10.254  -1.043   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.314  -0.772   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.320  -1.948   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       3.780  -1.904   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   39                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   21                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   19                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   10   20                                                  
CONECT   20   19                                                            
CONECT   21    8   22   39                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   37                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   36                                                  
CONECT   29   28   30   37                                                  
CONECT   30   29   31                                                       
CONECT   31   30   32   36                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   28   31                                                  
CONECT   37   29   25   38                                                  
CONECT   38   37   39                                                       
CONECT   39   38    5   21                                                  
MASTER        0    0    0    0    0    0    0    0   39    0   88    0
END

View in JSmol

Synonyms

Value	Source
Methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0,.0,.0,]docosa-2(10),4,6,8,19-pentaene-20-carboxylic acid	Generator

Chemical Formula

C₂₇H₃₄N₂O₁₀

Average Mass

546.5730 Da

Monoisotopic Mass

546.22135 Da

IUPAC Name

methyl (1R,15S,16S,17S,21S)-15-hydroxy-17-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0^{2,10}.0^{4,9}.0^{16,21}]docosa-2(10),4,6,8,19-pentaene-20-carboxylate

Traditional Name

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CO[C@@H](O[C@H]2O[C@@H](CO)[C@H](O)[C@@H](O)[C@@H]2O)[C@H]2[C@@H]1C[C@H]1N(CCC3=C1NC1=CC=CC=C31)C[C@H]2O

InChI Identifier

InChI=1S/C27H34N2O10/c1-36-25(35)15-11-37-26(39-27-24(34)23(33)22(32)19(10-30)38-27)20-14(15)8-17-21-13(6-7-29(17)9-18(20)31)12-4-2-3-5-16(12)28-21/h2-5,11,14,17-20,22-24,26-28,30-34H,6-10H2,1H3/t14-,17-,18-,19+,20+,22+,23-,24+,26+,27-/m1/s1

InChI Key

HNZGKRAKJFZQAY-HBRFXUCJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Neolamarckia cadamba	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Pyridoindoles

Direct Parent

Beta carbolines

Alternative Parents

Substituents

Beta-carboline
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
3-alkylindole
Indole
Azepane
Aralkylamine
Oxane
Benzenoid
Monosaccharide
Vinylogous ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Pyrrole
Methyl ester
Heteroaromatic compound
1,2-aminoalcohol
Amino acid or derivatives
Carboxylic acid ester
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Acetal
Azacycle
Oxacycle
Monocarboxylic acid or derivatives
Polyol
Carboxylic acid derivative
Organonitrogen compound
Organopnictogen compound
Alcohol
Organic oxide
Carbonyl group
Organic oxygen compound
Organic nitrogen compound
Organooxygen compound
Amine
Hydrocarbon derivative
Primary alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.52	ChemAxon
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	7.02	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	174.17 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	134.62 m³·mol⁻¹	ChemAxon
Polarizability	56.17 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163185281

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate (NP0215112)

MOL for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

3D MOL for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

3D SDF for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

3D-SDF for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

PDB for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

3D PDB for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

SMILES for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

INCHI for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

Structure for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)

3D Structure for NP0215112 (methyl (1r,15s,16s,17s,21s)-15-hydroxy-17-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-18-oxa-3,13-diazapentacyclo[11.9.0.0²,¹⁰.0⁴,⁹.0¹⁶,²¹]docosa-2(10),4,6,8,19-pentaene-20-carboxylate)