NP-MRD: Showing NP-Card for (1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate (NP0214988)

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Record Information

Version

2.0

Created at

2022-09-05 14:26:19 UTC

Updated at

2022-09-05 14:26:19 UTC

NP-MRD ID

NP0214988

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate

Description

(1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]Hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylate belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. Based on a literature review very few articles have been published on (1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]Hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052216262D          

 35 40  0  0  1  0            999 V2000
    2.6752    1.0110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309052216262D          

 35 40  0  0  1  0            999 V2000
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 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 27 30  1  0  0  0  0
 22 31  1  0  0  0  0
 18 31  1  0  0  0  0
 31 32  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  6  0  0  0
 35 33  1  6  0  0  0
 14 35  1  0  0  0  0
 18 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0214988

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1O[C@]1(C)C(=O)O[C@@H]1[C@H]2C[C@]34[C@@H]5C[C@H](O)[C@@H]3[C@@]2(C)C(=O)O[C@H]1C4=CO[C@@H]5OC(=O)CC(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C25H32O10/c1-10-24(5,35-10)21(29)34-16-12-7-25-11-6-14(26)18(25)23(12,4)20(28)33-17(16)13(25)9-31-19(11)32-15(27)8-22(2,3)30/h9-12,14,16-19,26,30H,6-8H2,1-5H3/t10-,11-,12-,14+,16-,17+,18-,19-,23+,24+,25-/m1/s1

> <INCHI_KEY>
MTSOBXIXNFODRC-OMYSBJTESA-N

> <FORMULA>
C25H32O10

> <MOLECULAR_WEIGHT>
492.521

> <EXACT_MASS>
492.19954723

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
49.77696539730903

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0^{1,6}.0^{2,13}.0^{10,15}]hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylate

> <JCHEM_LOGP>
0.39724018166666547

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.317589361635484

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.67542553618437

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7421574355175116

> <JCHEM_POLAR_SURFACE_AREA>
141.12

> <JCHEM_REFRACTIVITY>
115.76719999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0^{1,6}.0^{2,13}.0^{10,15}]hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       4.994   1.887   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.995   0.347   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.766  -0.986   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       4.226  -0.987   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.576  -2.383   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.692  -0.854   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.809  -2.116   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0       2.040   0.541   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       2.922   1.803   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.864   2.187   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.449   2.876   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.246   4.430   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.420   5.428   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       3.752   4.880   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.368   6.291   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.986   3.593   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.238   3.305   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.403   4.357   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.721   2.355   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.341   1.699   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.029   2.408   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -1.160   3.966   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -2.586   4.548   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -3.803   3.603   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -5.229   4.184   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -3.593   2.077   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.809   1.133   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -6.026   0.188   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.754   2.349   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -3.865  -0.083   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       0.018   4.985   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.187   6.588   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.683   7.000   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.278   8.420   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       2.429   5.657   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2    4                                                       
CONECT    4    3    2    5    6                                             
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11   19                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16   35                                             
CONECT   15   14                                                            
CONECT   16   14    9   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   31   35                                             
CONECT   19   18   10   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   31                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   29   30                                             
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   27                                                            
CONECT   31   22   18   32                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   14   18                                                  
MASTER        0    0    0    0    0    0    0    0   35    0   80    0
END

View in JSmol

Synonyms

Value	Source
(1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-Hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0,.0,.0,]hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylic acid	Generator

Chemical Formula

C₂₅H₃₂O₁₀

Average Mass

492.5210 Da

Monoisotopic Mass

492.19955 Da

IUPAC Name

(1R,5R,6S,8S,9S,10S,13S,14R,15S)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0^{1,6}.0^{2,13}.0^{10,15}]hexadec-2-en-14-yl (2S,3R)-2,3-dimethyloxirane-2-carboxylate

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H]1O[C@]1(C)C(=O)O[C@@H]1[C@H]2C[C@]34[C@@H]5C[C@H](O)[C@@H]3[C@@]2(C)C(=O)O[C@H]1C4=CO[C@@H]5OC(=O)CC(C)(C)O

InChI Identifier

InChI=1S/C25H32O10/c1-10-24(5,35-10)21(29)34-16-12-7-25-11-6-14(26)18(25)23(12,4)20(28)33-17(16)13(25)9-31-19(11)32-15(27)8-22(2,3)30/h9-12,14,16-19,26,30H,6-8H2,1-5H3/t10-,11-,12-,14+,16-,17+,18-,19-,23+,24+,25-/m1/s1

InChI Key

MTSOBXIXNFODRC-OMYSBJTESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Caprolactone
Delta valerolactone
Fatty acid ester
Delta_valerolactone
Oxepane
Oxirane carboxylic acid or derivatives
Oxirane carboxylic acid
Fatty acyl
Oxane
Tertiary alcohol
Cyclic alcohol
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Acetal
Hydrocarbon derivative
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Organic oxide
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.4	ChemAxon
pKa (Strongest Acidic)	14.68	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	141.12 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	115.77 m³·mol⁻¹	ChemAxon
Polarizability	49.78 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163045663

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate (NP0214988)

MOL for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

3D MOL for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

3D SDF for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

3D-SDF for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

PDB for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

3D PDB for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

SMILES for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

INCHI for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

Structure for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)

3D Structure for NP0214988 ((1r,5r,6s,8s,9s,10s,13s,14r,15s)-8-hydroxy-5-[(3-hydroxy-3-methylbutanoyl)oxy]-10-methyl-11-oxo-4,12-dioxapentacyclo[7.7.0.0¹,⁶.0²,¹³.0¹⁰,¹⁵]hexadec-2-en-14-yl (2s,3r)-2,3-dimethyloxirane-2-carboxylate)