NP-MRD: Showing NP-Card for (2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol (NP0214918)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 14:20:58 UTC

Updated at

2022-09-05 14:20:58 UTC

NP-MRD ID

NP0214918

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol

Description

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one. (2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol is found in Cicer bijugum. Based on a literature review very few articles have been published on (2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052216202D          

 35 39  0  0  1  0            999 V2000
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2136   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6985    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2136    1.0799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  6  0  0  0
 14 27  1  0  0  0  0
 27 28  2  0  0  0  0
 11 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
  9 30  1  0  0  0  0
 30 31  1  6  0  0  0
 31 32  1  0  0  0  0
  6 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
  5 35  1  0  0  0  0
M  END

     RDKit          3D

 61 65  0  0  0  0  0  0  0  0999 V2000
   -6.3696   -0.1104    2.8844 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2976   -0.1427    1.9673 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4507    0.0484    0.6370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7633    0.2941    0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0424    0.5115   -1.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0023    0.4826   -2.0300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7177    0.2382   -1.5811 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4137    0.0171   -0.2506 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0410   -0.1561    0.2359 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0958    0.2731   -0.5831 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6667    0.1770   -0.3203 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2767    0.6133   -1.2088 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6068    0.4839   -0.8979 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9814   -0.0822    0.3017 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2993   -0.2488    0.6894 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4390    0.1026   -0.0156 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3381   -0.9624   -0.1693 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1889   -0.6327   -1.2025 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3773   -1.5843   -1.2278 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0332   -1.4588   -0.0038 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6672    0.7829   -1.1663 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0647    1.5676   -2.1477 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.5066    1.4239    0.1897 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.5455    1.0010    1.0248 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1881    1.1364    0.8316 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3678    2.2822    0.8443 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0337   -0.5232    1.2003 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3113   -0.3882    0.8783 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2963   -0.7969    1.7113 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6918   -0.7908    1.4958 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9458   -2.1758    1.2977 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5482   -2.8416    2.2954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4824    0.7209   -3.2937 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8308    1.1588   -3.2039 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1795    0.7732   -1.8761 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0320   -0.1266    3.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1383   -0.8787    2.6603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8912    0.8756    2.7366 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5785    0.3168    0.8992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9502    0.2089   -2.3260 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3672    0.7611   -1.5382 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0626    1.0507   -2.1371 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3888    0.8288   -1.5992 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2917    0.5640   -0.9885 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6484   -0.8061   -2.1718 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0560   -2.6106   -1.4282 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0600   -1.2022   -2.0239 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9594   -2.3369    0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7690    0.8037   -1.4004 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5158    2.4289   -2.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6223    2.5195    0.0426 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4756    1.5270    1.8560 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2536    0.7288    1.8497 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4375    2.0297    1.0568 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2921   -0.9773    2.1615 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1170   -0.4043    2.4225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6167   -3.9323    1.9462 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5855   -2.5609    2.4535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9630   -2.9292    3.2374 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4290    0.6629   -3.9680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8069    2.2645   -3.2767 H   0  0  0  0  0  0  0  0  0  0  0  0
 32 31  1  0
 31 30  1  0
 30 29  1  0
 29 28  1  0
 28 27  2  0
 27 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 18 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 14 13  2  0
 13 12  1  0
 12 11  2  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
  8  7  2  0
  7  6  1  0
  6  5  2  0
  5 35  1  0
 35 34  1  0
 34 33  1  0
  5  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  1  0
  9 30  1  0
  3  8  1  0
 11 28  1  0
 33  6  1  0
 25 16  1  0
 32 57  1  0
 32 58  1  0
 32 59  1  0
 30 56  1  1
 27 55  1  0
 16 44  1  6
 18 45  1  6
 19 46  1  0
 19 47  1  0
 20 48  1  0
 21 49  1  6
 22 50  1  0
 23 51  1  6
 24 52  1  0
 25 53  1  1
 26 54  1  0
 13 43  1  0
 12 42  1  0
 10 41  1  0
  7 40  1  0
 34 60  1  0
 34 61  1  0
  4 39  1  0
  1 36  1  0
  1 37  1  0
  1 38  1  0
M  END


  Mrv1652309052216202D          

 35 39  0  0  1  0            999 V2000
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2136   -0.2549    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6985    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2136    1.0799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  6  0  0  0
 14 27  1  0  0  0  0
 27 28  2  0  0  0  0
 11 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
  9 30  1  0  0  0  0
 30 31  1  6  0  0  0
 31 32  1  0  0  0  0
  6 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
  5 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0214918

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@H]1OC2=CC(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)=CC=C2C=C1C1=CC2=C(OCO2)C=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C24H26O11/c1-29-16-8-18-17(31-10-32-18)7-13(16)14-5-11-3-4-12(6-15(11)34-23(14)30-2)33-24-22(28)21(27)20(26)19(9-25)35-24/h3-8,19-28H,9-10H2,1-2H3/t19-,20-,21+,22-,23+,24-/m1/s1

> <INCHI_KEY>
RBOIVOGFICXJQE-QMOXEECBSA-N

> <FORMULA>
C24H26O11

> <MOLECULAR_WEIGHT>
490.461

> <EXACT_MASS>
490.147511657

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
49.470597135716105

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol

> <JCHEM_LOGP>
0.8654474516666659

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19609079189619

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.200140015782086

> <JCHEM_PKA_STRONGEST_BASIC>
-2.981092343722577

> <JCHEM_POLAR_SURFACE_AREA>
145.53

> <JCHEM_REFRACTIVITY>
117.90790000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334   2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.335  -9.240   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      10.669  -7.700   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      10.669  -4.620   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -4.132  -0.476   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -5.037   0.770   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -4.132   2.016   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   35                                                  
CONECT    6    5    7   33                                                  
CONECT    7    6    8                                                       
CONECT    8    7    3    9                                                  
CONECT    9    8   10   30                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   28                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   27                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   25                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   16   26                                                  
CONECT   26   25                                                            
CONECT   27   14   28                                                       
CONECT   28   27   11   29                                                  
CONECT   29   28   30                                                       
CONECT   30   29    9   31                                                  
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33    6   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34    5                                                       
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₂₆O₁₁

Average Mass

490.4610 Da

Monoisotopic Mass

490.14751 Da

IUPAC Name

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol

Traditional Name

(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-{[(2S)-2-methoxy-3-(6-methoxy-2H-1,3-benzodioxol-5-yl)-2H-chromen-7-yl]oxy}oxane-3,4,5-triol

CAS Registry Number

Not Available

SMILES

CO[C@H]1OC2=CC(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)=CC=C2C=C1C1=CC2=C(OCO2)C=C1OC

InChI Identifier

InChI=1S/C24H26O11/c1-29-16-8-18-17(31-10-32-18)7-13(16)14-5-11-3-4-12(6-15(11)34-23(14)30-2)33-24-22(28)21(27)20(26)19(9-25)35-24/h3-8,19-28H,9-10H2,1-2H3/t19-,20-,21+,22-,23+,24-/m1/s1

InChI Key

RBOIVOGFICXJQE-QMOXEECBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cicer bijugum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Isoflavonoids

Sub Class

Isoflavonoid O-glycosides

Direct Parent

Isoflavonoid O-glycosides

Alternative Parents

Substituents

Isoflavonoid o-glycoside
Isoflavonoid-7-o-glycoside
2p-methoxyisoflavonoid-skeleton
2-methoxyisoflavonoid-skeleton
Isoflav-3-ene skeleton
Phenolic glycoside
Glycosyl compound
O-glycosyl compound
Benzopyran
1-benzopyran
Benzodioxole
Anisole
Alkyl aryl ether
Oxane
Monosaccharide
Benzenoid
Secondary alcohol
Organoheterocyclic compound
Ether
Oxacycle
Polyol
Acetal
Organic oxygen compound
Primary alcohol
Alcohol
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.87	ChemAxon
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	145.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	117.91 m³·mol⁻¹	ChemAxon
Polarizability	49.47 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162992132

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol (NP0214918)

MOL for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

3D MOL for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

3D SDF for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

3D-SDF for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

PDB for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

3D PDB for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

SMILES for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

INCHI for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

Structure for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)

3D Structure for NP0214918 ((2r,3s,4s,5r,6s)-2-(hydroxymethyl)-6-{[(2s)-2-methoxy-3-(6-methoxy-2h-1,3-benzodioxol-5-yl)-2h-chromen-7-yl]oxy}oxane-3,4,5-triol)