NP-MRD: Showing NP-Card for phenol, 3-tridecyl- (NP0214751)

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Record Information

Version

2.0

Created at

2022-09-05 14:08:39 UTC

Updated at

2022-09-05 14:08:39 UTC

NP-MRD ID

NP0214751

Secondary Accession Numbers

None

Natural Product Identification

Common Name

phenol, 3-tridecyl-

Description

3-Tridecylphenol belongs to the class of organic compounds known as 1-hydroxy-4-unsubstituted benzenoids. These are phenols that are unsubstituted at the 4-position. phenol, 3-tridecyl- is found in Caulocystis cephalornithos, Ginkgo biloba and Schistochila appendiculata. 3-Tridecylphenol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 52  0  0  0  0  0  0  0  0999 V2000
   -5.9006    1.3845   -1.1934 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4889    0.0228   -0.8510 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5983   -1.0371   -1.4452 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2020   -0.9213   -0.8983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2407   -1.1088    0.5944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8348   -1.0269    1.2092 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1865    0.2854    0.9558 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8101    0.4096    1.5484 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1218   -0.6182    1.0029 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5140   -0.5269    1.5752 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1692    0.7884    1.3071 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3528    1.1656   -0.0970 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1805    0.3547   -0.9906 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6027    0.2003   -0.6553 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9813   -0.8777    0.1112 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2920   -1.1190    0.4917 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2474   -0.2258    0.0725 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8969    0.8639   -0.6971 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9228    1.7313   -1.0876 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5860    1.0746   -1.0575 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5167    1.4114   -2.2331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0631    1.6116   -0.5109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7199    2.1246   -1.0310 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5128   -0.0630   -1.3187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6365   -0.0572    0.2253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5634   -0.9586   -2.5661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0327   -2.0523   -1.2323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8038    0.0966   -1.1135 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5297   -1.7092   -1.3042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6836   -2.1077    0.7847 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9081   -0.3760    1.1093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9348   -1.3054    2.2553 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2708   -1.8691    0.7123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0618    0.4143   -0.1535 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8622    1.0932    1.2945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4482    1.4537    1.4612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9175    0.2198    2.6529 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2206   -0.5468   -0.0977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2776   -1.6190    1.3155 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0442   -1.4158    1.2244 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3878   -0.6777    2.6877 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5517    1.5712    1.8027 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1680    0.8750    1.8231 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3216    1.2367   -0.5615 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7142    2.2169   -0.1348 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7879   -0.6758   -1.1913 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1524    0.8490   -2.0084 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2550   -1.6187    0.4639 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5448   -1.9857    1.0993 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2897   -0.3937    0.3594 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3974    1.5266   -1.9808 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3022    1.9121   -1.6515 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 18 20  2  0
 20 14  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  2 24  1  0
  2 25  1  0
  3 26  1  0
  3 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  0
  5 31  1  0
  6 32  1  0
  6 33  1  0
  7 34  1  0
  7 35  1  0
  8 36  1  0
  8 37  1  0
  9 38  1  0
  9 39  1  0
 10 40  1  0
 10 41  1  0
 11 42  1  0
 11 43  1  0
 12 44  1  0
 12 45  1  0
 13 46  1  0
 13 47  1  0
 15 48  1  0
 16 49  1  0
 17 50  1  0
 19 51  1  0
 20 52  1  0
M  END


  Mrv1533004261503382D          

 20 20  0  0  0  0            999 V2000
    2.8579   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -9.0750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -9.9000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 14 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0214751

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCC1=CC=CC(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C19H32O/c1-2-3-4-5-6-7-8-9-10-11-12-14-18-15-13-16-19(20)17-18/h13,15-17,20H,2-12,14H2,1H3

> <INCHI_KEY>
IFGRPNIAGKTMCH-UHFFFAOYSA-N

> <FORMULA>
C19H32O

> <MOLECULAR_WEIGHT>
276.464

> <EXACT_MASS>
276.24531565

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
36.988470096089586

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-tridecylphenol

> <ALOGPS_LOGP>
8.11

> <JCHEM_LOGP>
7.517925863666666

> <ALOGPS_LOGS>
-6.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.105147601686587

> <JCHEM_PKA_STRONGEST_BASIC>
-5.478421324745654

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
88.2921

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.34e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
phenol, 3-tridecyl-

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0       5.335 -13.860   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.668 -14.630   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.002 -13.860   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.336 -14.630   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.669 -13.860   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.003 -14.630   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      13.337 -13.860   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      14.670 -14.630   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      16.004 -13.860   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      17.338 -14.630   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      18.672 -13.860   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      20.005 -14.630   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      21.339 -13.860   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      22.673 -14.630   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      24.006 -13.860   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      25.340 -14.630   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      25.340 -16.170   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      24.006 -16.940   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      24.006 -18.480   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      22.673 -16.170   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   14                                                       
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Value	Source
3-Tridecyl phenol	ChEMBL

Chemical Formula

C₁₉H₃₂O

Average Mass

276.4640 Da

Monoisotopic Mass

276.24532 Da

IUPAC Name

3-tridecylphenol

Traditional Name

phenol, 3-tridecyl-

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCC1=CC=CC(O)=C1

InChI Identifier

InChI=1S/C19H32O/c1-2-3-4-5-6-7-8-9-10-11-12-14-18-15-13-16-19(20)17-18/h13,15-17,20H,2-12,14H2,1H3

InChI Key

IFGRPNIAGKTMCH-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Caulocystis cephalornithos	LOTUS Database	35616633
Ginkgo biloba	LOTUS Database	35616633
Schistochila appendiculata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1-hydroxy-4-unsubstituted benzenoids. These are phenols that are unsubstituted at the 4-position.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Phenols

Sub Class

1-hydroxy-4-unsubstituted benzenoids

Direct Parent

1-hydroxy-4-unsubstituted benzenoids

Alternative Parents

Substituents

1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Monocyclic benzene moiety
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	8.11	ALOGPS
logP	7.52	ChemAxon
logS	-6.6	ALOGPS
pKa (Strongest Acidic)	10.11	ChemAxon
pKa (Strongest Basic)	-5.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	88.29 m³·mol⁻¹	ChemAxon
Polarizability	36.99 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

155892

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for phenol, 3-tridecyl- (NP0214751)

MOL for NP0214751 (phenol, 3-tridecyl-)

3D MOL for NP0214751 (phenol, 3-tridecyl-)

3D SDF for NP0214751 (phenol, 3-tridecyl-)

3D-SDF for NP0214751 (phenol, 3-tridecyl-)

PDB for NP0214751 (phenol, 3-tridecyl-)

3D PDB for NP0214751 (phenol, 3-tridecyl-)

SMILES for NP0214751 (phenol, 3-tridecyl-)

INCHI for NP0214751 (phenol, 3-tridecyl-)

Structure for NP0214751 (phenol, 3-tridecyl-)

3D Structure for NP0214751 (phenol, 3-tridecyl-)