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Record Information
Version2.0
Created at2022-09-05 13:53:22 UTC
Updated at2022-09-05 13:53:22 UTC
NP-MRD IDNP0214554
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione
DescriptionLemonomycin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. (1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione is found in Streptomyces candidus. (1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione was first documented in 2009 (PMID: 19196163). Based on a literature review a small amount of articles have been published on Lemonomycin (PMID: 35807568) (PMID: 25957213) (PMID: 25083002) (PMID: 22848018).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H41N3O9
Average Mass551.6370 Da
Monoisotopic Mass551.28428 Da
IUPAC NameNot Available
Traditional NameNot Available
CAS Registry NumberNot Available
SMILES
COC1=C(C)C(=O)C2=C([C@H](CO[C@H]3C[C@](C)(O)[C@@H]([C@H](C)O3)N(C)C)N3[C@@H](O)[C@@H]4C[C@@H](C(O)O)[C@@H](N4)[C@@H]3C2)C1=O
InChI Identifier
InChI=1S/C27H41N3O9/c1-11-21(31)13-8-16-20-14(26(34)35)7-15(28-20)25(33)30(16)17(19(13)22(32)23(11)37-6)10-38-18-9-27(3,36)24(29(4)5)12(2)39-18/h12,14-18,20,24-26,28,33-36H,7-10H2,1-6H3/t12-,14+,15-,16-,17-,18+,20+,24+,25-,27-/m0/s1
InChI KeyJXWCEWIDCYAQRW-RNWDBXQFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Streptomyces candidusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentAminoglycosides
Alternative Parents
Substituents
  • Aminoglycoside core
  • Isoquinoline quinone
  • Isoquinolone
  • Azepane
  • N-alkylpiperazine
  • 1,4-diazinane
  • Oxane
  • Piperazine
  • 1,3-aminoalcohol
  • Vinylogous ester
  • Pyrrolidine
  • Tertiary alcohol
  • 1,2-aminoalcohol
  • Hemiaminal
  • Ketone
  • Tertiary aliphatic amine
  • Tertiary amine
  • Acetal
  • Azacycle
  • Oxacycle
  • Secondary amine
  • Organoheterocyclic compound
  • Secondary aliphatic amine
  • Carbonyl hydrate
  • Alkanolamine
  • Organic nitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Amine
  • Carbonyl group
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Alcohol
  • Aldehyde
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8730105
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkLemonomycin
METLIN IDNot Available
PubChem Compound10554716
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Tao S, Wang Y, Hong R, Huang SH: Potent Antibiotic Lemonomycin: A Glimpse of Its Discovery, Origin, and Chemical Synthesis. Molecules. 2022 Jul 5;27(13):4324. doi: 10.3390/molecules27134324. [PubMed:35807568 ]
  2. Briegel AC, Cummings AK, Smith GR, Doroski MD, Boyko WJ, Piro NA, Kassel WS, Giuliano RM: Synthesis of lemonose derivatives: methyl 4-amino-3-O,4-N-carbonyl-2,4,6-trideoxy-3-C-methyl-alpha-l-lyxo-pyranoside and its phenyl thioglycoside. Carbohydr Res. 2015 May 29;409:63-8. doi: 10.1016/j.carres.2015.03.006. Epub 2015 Apr 9. [PubMed:25957213 ]
  3. Jimenez-Somarribas A, Williams RM: Synthetic studies on lemonomycin: construction of the tetracyclic core. Tetrahedron. 2013 Sep 2;69(35):7505-7512. doi: 10.1016/j.tet.2013.05.009. [PubMed:25083002 ]
  4. Yoshida A, Akaiwa M, Asakawa T, Hamashima Y, Yokoshima S, Fukuyama T, Kan T: Total synthesis of (-)-lemonomycin. Chemistry. 2012 Sep 3;18(36):11192-5. doi: 10.1002/chem.201202073. Epub 2012 Jul 30. [PubMed:22848018 ]
  5. Wu YC, Bernadat G, Masson G, Couturier C, Schlama T, Zhu J: Synthetic studies on (-)-lemonomycin: an efficient asymmetric synthesis of lemonomycinone amide. J Org Chem. 2009 Mar 6;74(5):2046-52. doi: 10.1021/jo8027449. [PubMed:19196163 ]
  6. LOTUS database [Link]