Record Information |
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Version | 2.0 |
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Created at | 2022-09-05 13:53:22 UTC |
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Updated at | 2022-09-05 13:53:22 UTC |
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NP-MRD ID | NP0214554 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | (1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione |
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Description | Lemonomycin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. (1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione is found in Streptomyces candidus. (1r,2s,10r,12s,13s,15r)-15-(dihydroxymethyl)-10-({[(2r,4s,5r,6s)-5-(dimethylamino)-4-hydroxy-4,6-dimethyloxan-2-yl]oxy}methyl)-12-hydroxy-7-methoxy-6-methyl-11,16-diazatetracyclo[11.2.1.0²,¹¹.0⁴,⁹]hexadeca-4(9),6-diene-5,8-dione was first documented in 2009 (PMID: 19196163). Based on a literature review a small amount of articles have been published on Lemonomycin (PMID: 35807568) (PMID: 25957213) (PMID: 25083002) (PMID: 22848018). |
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Structure | COC1=C(C)C(=O)C2=C([C@H](CO[C@H]3C[C@](C)(O)[C@@H]([C@H](C)O3)N(C)C)N3[C@@H](O)[C@@H]4C[C@@H](C(O)O)[C@@H](N4)[C@@H]3C2)C1=O InChI=1S/C27H41N3O9/c1-11-21(31)13-8-16-20-14(26(34)35)7-15(28-20)25(33)30(16)17(19(13)22(32)23(11)37-6)10-38-18-9-27(3,36)24(29(4)5)12(2)39-18/h12,14-18,20,24-26,28,33-36H,7-10H2,1-6H3/t12-,14+,15-,16-,17-,18+,20+,24+,25-,27-/m0/s1 |
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Synonyms | Not Available |
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Chemical Formula | C27H41N3O9 |
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Average Mass | 551.6370 Da |
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Monoisotopic Mass | 551.28428 Da |
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IUPAC Name | Not Available |
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Traditional Name | Not Available |
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CAS Registry Number | Not Available |
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SMILES | COC1=C(C)C(=O)C2=C([C@H](CO[C@H]3C[C@](C)(O)[C@@H]([C@H](C)O3)N(C)C)N3[C@@H](O)[C@@H]4C[C@@H](C(O)O)[C@@H](N4)[C@@H]3C2)C1=O |
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InChI Identifier | InChI=1S/C27H41N3O9/c1-11-21(31)13-8-16-20-14(26(34)35)7-15(28-20)25(33)30(16)17(19(13)22(32)23(11)37-6)10-38-18-9-27(3,36)24(29(4)5)12(2)39-18/h12,14-18,20,24-26,28,33-36H,7-10H2,1-6H3/t12-,14+,15-,16-,17-,18+,20+,24+,25-,27-/m0/s1 |
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InChI Key | JXWCEWIDCYAQRW-RNWDBXQFSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | Aminoglycosides |
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Alternative Parents | |
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Substituents | - Aminoglycoside core
- Isoquinoline quinone
- Isoquinolone
- Azepane
- N-alkylpiperazine
- 1,4-diazinane
- Oxane
- Piperazine
- 1,3-aminoalcohol
- Vinylogous ester
- Pyrrolidine
- Tertiary alcohol
- 1,2-aminoalcohol
- Hemiaminal
- Ketone
- Tertiary aliphatic amine
- Tertiary amine
- Acetal
- Azacycle
- Oxacycle
- Secondary amine
- Organoheterocyclic compound
- Secondary aliphatic amine
- Carbonyl hydrate
- Alkanolamine
- Organic nitrogen compound
- Organic oxide
- Organopnictogen compound
- Amine
- Carbonyl group
- Organonitrogen compound
- Hydrocarbon derivative
- Alcohol
- Aldehyde
- Aliphatic heteropolycyclic compound
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Molecular Framework | Aliphatic heteropolycyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Tao S, Wang Y, Hong R, Huang SH: Potent Antibiotic Lemonomycin: A Glimpse of Its Discovery, Origin, and Chemical Synthesis. Molecules. 2022 Jul 5;27(13):4324. doi: 10.3390/molecules27134324. [PubMed:35807568 ]
- Briegel AC, Cummings AK, Smith GR, Doroski MD, Boyko WJ, Piro NA, Kassel WS, Giuliano RM: Synthesis of lemonose derivatives: methyl 4-amino-3-O,4-N-carbonyl-2,4,6-trideoxy-3-C-methyl-alpha-l-lyxo-pyranoside and its phenyl thioglycoside. Carbohydr Res. 2015 May 29;409:63-8. doi: 10.1016/j.carres.2015.03.006. Epub 2015 Apr 9. [PubMed:25957213 ]
- Jimenez-Somarribas A, Williams RM: Synthetic studies on lemonomycin: construction of the tetracyclic core. Tetrahedron. 2013 Sep 2;69(35):7505-7512. doi: 10.1016/j.tet.2013.05.009. [PubMed:25083002 ]
- Yoshida A, Akaiwa M, Asakawa T, Hamashima Y, Yokoshima S, Fukuyama T, Kan T: Total synthesis of (-)-lemonomycin. Chemistry. 2012 Sep 3;18(36):11192-5. doi: 10.1002/chem.201202073. Epub 2012 Jul 30. [PubMed:22848018 ]
- Wu YC, Bernadat G, Masson G, Couturier C, Schlama T, Zhu J: Synthetic studies on (-)-lemonomycin: an efficient asymmetric synthesis of lemonomycinone amide. J Org Chem. 2009 Mar 6;74(5):2046-52. doi: 10.1021/jo8027449. [PubMed:19196163 ]
- LOTUS database [Link]
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