NP-MRD: Showing NP-Card for 5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole (NP0214471)

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Record Information

Version

2.0

Created at

2022-09-05 13:46:39 UTC

Updated at

2022-09-05 13:46:40 UTC

NP-MRD ID

NP0214471

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole

Description

Zuonin B belongs to the class of organic compounds known as 7,7'-epoxylignans. These are lignans with a structure based on a 2,5-diaryl-3, 4-dimethyltetrahydrofuran skeleton. 5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole is found in Holostylis reniformis. 5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole was first documented in 2004 (PMID: 15305043). Based on a literature review a small amount of articles have been published on Zuonin B (PMID: 22916726) (PMID: 22454678).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052215462D          

 25 29  0  0  1  0            999 V2000
    5.2955    4.0936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9600    3.3400    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3725    2.6255    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1929    2.5392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6779    3.2067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4983    3.1204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8339    2.3668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3490    1.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5285    1.7856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8339    1.0319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6185    1.2868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6185    2.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8204    2.0124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530    3.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5399    3.7205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 18 23  1  0  0  0  0
 14 24  1  0  0  0  0
  2 24  1  0  0  0  0
 24 25  1  6  0  0  0
M  END

     RDKit          3D

 45 49  0  0  0  0  0  0  0  0999 V2000
   -0.8076   -2.7955   -1.3429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5423   -1.8117   -0.2566 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.9988   -0.4471   -0.6529 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4108   -0.1693   -0.3846 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3010   -0.0648   -1.4308 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6539    0.1990   -1.2244 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1247    0.3617    0.0610 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2483    0.2609    1.1258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9049   -0.0028    0.8907 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0282    0.4721    2.2549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2765    1.0332    1.8828 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3918    0.6251    0.5330 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1385    0.3795    0.1094 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0830   -0.1257   -0.3610 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2466    0.5319    0.2372 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3826    0.8061    1.5627 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5154    1.4326    2.0579 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5326    1.7920    1.2108 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4261    1.5275   -0.1438 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2837    0.9020   -0.6033 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5848    1.9876   -0.7867 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1274    2.9902    0.0855 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7786    2.4180    1.3542 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9584   -1.5814   -0.0390 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7747   -2.3545   -1.0485 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8244   -2.3064   -2.3333 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8522   -3.1937   -1.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1542   -3.6906   -1.3057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9960   -2.1788    0.6818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7045   -0.2653   -1.7059 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9679   -0.1853   -2.4321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3646    0.2838   -2.0350 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2646   -0.0713    1.7566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1254    0.6100    2.4338 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2496    2.1400    1.8759 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0609   -0.0063   -1.4570 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5923    0.5300    2.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6346    1.6560    3.1121 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2203    0.7042   -1.6665 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2137    3.0793   -0.0410 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5707    3.9325   -0.0914 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2673   -1.8654    0.9647 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3563   -2.2616   -2.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7768   -1.8695   -1.0832 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9442   -3.4083   -0.7521 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 24  1  0
 24 25  1  0
 24 14  1  0
 14 13  1  0
 13  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7 12  1  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 23  1  0
 23 22  1  0
 22 21  1  0
 21 19  1  0
 19 20  2  0
  3  2  1  0
  9  4  1  0
 20 15  1  0
  8  7  1  0
 19 18  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  1
 24 42  1  1
 25 43  1  0
 25 44  1  0
 25 45  1  0
 14 36  1  6
  3 30  1  6
  5 31  1  0
  6 32  1  0
 11 34  1  0
 11 35  1  0
  9 33  1  0
 16 37  1  0
 17 38  1  0
 22 40  1  0
 22 41  1  0
 20 39  1  0
M  END


  Mrv1652309052215462D          

 25 29  0  0  1  0            999 V2000
    5.2955    4.0936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9600    3.3400    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3725    2.6255    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.1929    2.5392    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6779    3.2067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4983    3.1204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8339    2.3668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3490    1.6993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5285    1.7856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8339    1.0319    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6185    1.2868    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6185    2.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8204    2.0124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530    3.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5399    3.7205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  4  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  7 12  1  0  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 15 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 18 23  1  0  0  0  0
 14 24  1  0  0  0  0
  2 24  1  0  0  0  0
 24 25  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0214471

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@@H](C)[C@@H](O[C@@H]1C1=CC=C2OCOC2=C1)C1=CC=C2OCOC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C20H20O5/c1-11-12(2)20(14-4-6-16-18(8-14)24-10-22-16)25-19(11)13-3-5-15-17(7-13)23-9-21-15/h3-8,11-12,19-20H,9-10H2,1-2H3/t11-,12+,19-,20+

> <INCHI_KEY>
QFUXQRHAJWXPGP-JARDSOJUSA-N

> <FORMULA>
C20H20O5

> <MOLECULAR_WEIGHT>
340.375

> <EXACT_MASS>
340.131073744

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
36.120021450757946

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(2S,3S,4R,5R)-5-(2H-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2H-1,3-benzodioxole

> <JCHEM_LOGP>
4.075239864333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.024051586120543

> <JCHEM_POLAR_SURFACE_AREA>
46.150000000000006

> <JCHEM_REFRACTIVITY>
89.59610000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-[(2S,3S,4R,5R)-5-(2H-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2H-1,3-benzodioxole

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       9.885   7.641   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.259   6.235   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.029   4.901   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.560   4.740   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.465   5.986   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      13.997   5.825   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      14.623   4.418   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.718   3.172   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.187   3.333   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      14.623   1.926   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      16.088   2.402   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      16.088   3.942   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       8.998   3.756   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       7.752   5.914   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.608   6.945   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4   13                                                  
CONECT    4    3    5    9                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   12                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8    4                                                       
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    7                                                       
CONECT   13    3   14                                                       
CONECT   14   13   15   24                                                  
CONECT   15   14   16   20                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19   15                                                       
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   18                                                       
CONECT   24   14    2   25                                                  
CONECT   25   24                                                            
MASTER        0    0    0    0    0    0    0    0   25    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₀O₅

Average Mass

340.3750 Da

Monoisotopic Mass

340.13107 Da

IUPAC Name

5-[(2S,3S,4R,5R)-5-(2H-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2H-1,3-benzodioxole

Traditional Name

5-[(2S,3S,4R,5R)-5-(2H-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2H-1,3-benzodioxole

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@@H](C)[C@@H](O[C@@H]1C1=CC=C2OCOC2=C1)C1=CC=C2OCOC2=C1

InChI Identifier

InChI=1S/C20H20O5/c1-11-12(2)20(14-4-6-16-18(8-14)24-10-22-16)25-19(11)13-3-5-15-17(7-13)23-9-21-15/h3-8,11-12,19-20H,9-10H2,1-2H3/t11-,12+,19-,20+

InChI Key

QFUXQRHAJWXPGP-JARDSOJUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Holostylis reniformis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 7,7'-epoxylignans. These are lignans with a structure based on a 2,5-diaryl-3, 4-dimethyltetrahydrofuran skeleton.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Furanoid lignans

Sub Class

Tetrahydrofuran lignans

Direct Parent

7,7'-epoxylignans

Alternative Parents

Substituents

7,7p-epoxylignan
Dibenzylbutane lignan skeleton
Benzodioxole
Benzenoid
Oxolane
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Acetal
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.08	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	46.15 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	89.6 m³·mol⁻¹	ChemAxon
Polarizability	36.12 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

51381166

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Park BY, Min BS, Kwon OK, Oh SR, Ahn KS, Kim TJ, Kim DY, Bae K, Lee HK: Increase of caspase-3 activity by lignans from Machilus thunbergii in HL-60 cells. Biol Pharm Bull. 2004 Aug;27(8):1305-7. doi: 10.1248/bpb.27.1305. [PubMed:15305043 ]
Kaoud TS, Park H, Mitra S, Yan C, Tseng CC, Shi Y, Jose J, Taliaferro JM, Lee K, Ren P, Hong J, Dalby KN: Manipulating JNK signaling with (--)-zuonin A. ACS Chem Biol. 2012 Nov 16;7(11):1873-83. doi: 10.1021/cb300261e. Epub 2012 Aug 30. [PubMed:22916726 ]
Lee MY, Yuk JE, Kwon OK, Oh SR, Lee HK, Ahn KS: Zuonin B Inhibits Lipopolysaccharide-Induced Inflammation via Downregulation of the ERK1/2 and JNK Pathways in RAW264.7 Macrophages. Evid Based Complement Alternat Med. 2012;2012:728196. doi: 10.1155/2012/728196. Epub 2012 Feb 1. [PubMed:22454678 ]
LOTUS database [Link]

Showing NP-Card for 5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole (NP0214471)

MOL for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

3D MOL for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

3D SDF for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

3D-SDF for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

PDB for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

3D PDB for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

SMILES for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

INCHI for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

Structure for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)

3D Structure for NP0214471 (5-[(2s,3s,4r,5r)-5-(2h-1,3-benzodioxol-5-yl)-3,4-dimethyloxolan-2-yl]-2h-1,3-benzodioxole)