Np mrd loader

Record Information
Version2.0
Created at2022-09-05 13:04:12 UTC
Updated at2022-09-05 13:04:12 UTC
NP-MRD IDNP0213923
Secondary Accession NumbersNone
Natural Product Identification
Common Nameascr#1
DescriptionAscr#1, also known as daumone or ascaroside C7, belongs to the class of organic compounds known as sugar acids and derivatives. Sugar acids and derivatives are compounds containing a saccharide unit which bears a carboxylic acid group. Thus, ascr#1 is considered to be a fatty acyl glycoside. Ascr#1 is a secondary metabolite. Secondary metabolites are metabolically or physiologically non-essential metabolites that may serve a role as defense or signalling molecules. In some cases they are simply molecules that arise from the incomplete metabolism of other secondary metabolites. ascr#1 is found in Caenorhabditis elegans and Panagrellus redivivus. ascr#1 was first documented in 2018 (PMID: 29480728). Based on a literature review a small amount of articles have been published on ascr#1 (PMID: 35031295) (PMID: 32579656) (PMID: 31634473) (PMID: 31405082).
Structure
Thumb
Synonyms
ValueSource
(-)-6R-(3'r,5'r-Dihydroxy-6's-methyl-(2H)-tetrahydropyran-2'-yloxy)heptanoic acidChEBI
(-)-6R-(3'r,5'r-Dihydroxy-6's-methyltetrahydro-pyran-2'-R-yloxy)heptanoic acidChEBI
(-)-DaumoneChEBI
Ascaroside C7ChEBI
DaumoneChEBI
Daumone-1ChEBI
(-)-6R-(3'r,5'r-Dihydroxy-6's-methyl-(2H)-tetrahydropyran-2'-yloxy)heptanoateGenerator
(-)-6R-(3'r,5'r-Dihydroxy-6's-methyltetrahydro-pyran-2'-R-yloxy)heptanoateGenerator
Chemical FormulaC13H24O6
Average Mass276.3290 Da
Monoisotopic Mass276.15729 Da
IUPAC Name(6R)-6-{[(2R,3R,5R,6S)-3,5-dihydroxy-6-methyloxan-2-yl]oxy}heptanoic acid
Traditional Name(6R)-6-{[(2R,3R,5R,6S)-3,5-dihydroxy-6-methyloxan-2-yl]oxy}heptanoic acid
CAS Registry NumberNot Available
SMILES
C[C@H](CCCCC(O)=O)O[C@@H]1O[C@@H](C)[C@H](O)C[C@H]1O
InChI Identifier
InChI=1S/C13H24O6/c1-8(5-3-4-6-12(16)17)18-13-11(15)7-10(14)9(2)19-13/h8-11,13-15H,3-7H2,1-2H3,(H,16,17)/t8-,9+,10-,11-,13-/m1/s1
InChI KeyKBTQMAFDKPKMEJ-UYNYGYNWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Caenorhabditis elegansLOTUS Database
Panagrellus redivivusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as sugar acids and derivatives. Sugar acids and derivatives are compounds containing a saccharide unit which bears a carboxylic acid group.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentSugar acids and derivatives
Alternative Parents
Substituents
  • Hexose monosaccharide
  • Medium-chain fatty acid
  • Branched fatty acid
  • Heterocyclic fatty acid
  • Hydroxy fatty acid
  • Sugar acid
  • Methyl-branched fatty acid
  • Fatty acyl
  • Monosaccharide
  • Oxane
  • Fatty acid
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Acetal
  • Oxacycle
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.76ChemAxon
pKa (Strongest Acidic)4.13ChemAxon
pKa (Strongest Basic)-3.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area96.22 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity67.19 m³·mol⁻¹ChemAxon
Polarizability29.33 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00045627
Chemspider ID9646210
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11471380
PDB IDNot Available
ChEBI ID78786
Good Scents IDNot Available
References
General References
  1. Dong C, Reilly DK, Bergame C, Dolke F, Srinivasan J, von Reuss SH: Comparative Ascaroside Profiling of Caenorhabditis Exometabolomes Reveals Species-Specific (omega) and (omega - 2)-Hydroxylation Downstream of Peroxisomal beta-Oxidation. J Org Chem. 2018 Jul 6;83(13):7109-7120. doi: 10.1021/acs.joc.8b00094. Epub 2018 Mar 5. [PubMed:29480728 ]
  2. Wang J, Cao L, Huang Z, Gu X, Cui Y, Li J, Li Y, Xu C, Han R: Influence of the ascarosides on the recovery, yield and dispersal of entomopathogenic nematodes. J Invertebr Pathol. 2022 Feb;188:107717. doi: 10.1016/j.jip.2022.107717. Epub 2022 Jan 11. [PubMed:35031295 ]
  3. Ning S, Zhang L, Ma J, Chen L, Zeng G, Yang C, Zhou Y, Guo X, Deng X: Modular and scalable synthesis of nematode pheromone ascarosides: implications in eliciting plant defense response. Org Biomol Chem. 2020 Jul 8;18(26):4956-4961. doi: 10.1039/d0ob00652a. [PubMed:32579656 ]
  4. Hartley CJ, Lillis PE, Owens RA, Griffin CT: Infective juveniles of entomopathogenic nematodes (Steinernema and Heterorhabditis) secrete ascarosides and respond to interspecific dispersal signals. J Invertebr Pathol. 2019 Nov;168:107257. doi: 10.1016/j.jip.2019.107257. Epub 2019 Oct 18. [PubMed:31634473 ]
  5. Park JY, Joo HJ, Park S, Paik YK: Ascaroside Pheromones: Chemical Biology and Pleiotropic Neuronal Functions. Int J Mol Sci. 2019 Aug 9;20(16):3898. doi: 10.3390/ijms20163898. [PubMed:31405082 ]
  6. LOTUS database [Link]