NP-MRD: Showing NP-Card for 6-methoxyindolo[2,3-a]carbazole-5-carbonitrile (NP0213858)

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Record Information

Version

2.0

Created at

2022-09-05 12:58:13 UTC

Updated at

2022-09-05 12:58:13 UTC

NP-MRD ID

NP0213858

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-methoxyindolo[2,3-a]carbazole-5-carbonitrile

Description

SCHEMBL16431318 belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole. Based on a literature review very few articles have been published on SCHEMBL16431318.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 39  0  0  0  0  0  0  0  0999 V2000
   -1.9504    3.0528   -0.5290 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6181    1.8508   -1.2026 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7532    0.9129   -0.7002 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5904    0.9866   -0.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1054    2.0508   -1.7994 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5028    2.9286   -2.4730 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4608    0.0267   -0.4605 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9832   -1.0125    0.3381 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3784   -1.0797    0.6137 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2216   -0.1063    0.0830 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5653   -0.4662    0.5576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8153    0.0799    0.3902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9278   -0.5049    0.9813 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7563   -1.6441    1.7396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5045   -2.2001    1.9134 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4241   -1.6027    1.3191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0597   -1.9230    1.3110 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9899   -1.7396    0.6711 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2047   -1.2664    0.1395 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5256   -1.7017    0.2181 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5449   -1.0267   -0.4200 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2367    0.0997   -1.1465 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9270    0.5264   -1.2210 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9007   -0.1332   -0.5924 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0087    2.9311    0.5666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2535    3.8749   -0.7575 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9497    3.3622   -0.9542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9280    0.9606   -0.1996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8988   -0.0580    0.8357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6074   -2.1271    2.2163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4283   -3.0980    2.5210 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7497   -2.5933    0.7965 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5813   -1.3875   -0.3451 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0422    0.6281   -1.6473 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7039    1.3986   -1.7861 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17  9  2  0
  9  8  1  0
  8 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  2  0
 24  7  1  0
  7  4  2  0
  4  5  1  0
  5  6  3  0
  4  3  1  0
  9 10  1  0
  7  8  1  0
 16 11  1  0
 24 19  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
 12 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 20 32  1  0
 21 33  1  0
 22 34  1  0
 23 35  1  0
M  END


  Mrv1652309052214582D          

 24 28  0  0  0  0            999 V2000
    4.7501    2.3485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9251    2.3485    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5126    1.6341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6876    1.6341    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2751    2.3485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8626    3.0630    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2751    0.9196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6876    0.2051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5126    0.2051    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9251    0.9196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7321    0.7481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3995    1.2330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1532    0.8974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2394    0.0769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5720   -0.4080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8183   -0.0724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0647   -0.4080    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1356   -0.4080    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3819   -0.0724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6282   -0.4080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0392    0.0769    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470    0.8974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8007    1.2330    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4681    0.7481    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  3  0  0  0  0
  4  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  3 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
  9 17  2  0  0  0  0
  8 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 19 24  1  0  0  0  0
  7 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0213858

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C2C3=CC=CC=C3N=C2C2=NC3=CC=CC=C3C2=C1C#N

> <INCHI_IDENTIFIER>
InChI=1S/C20H11N3O/c1-24-20-13(10-21)16-11-6-2-4-8-14(11)22-18(16)19-17(20)12-7-3-5-9-15(12)23-19/h2-9H,1H3

> <INCHI_KEY>
RDDOSCZPCHSCJF-UHFFFAOYSA-N

> <FORMULA>
C20H11N3O

> <MOLECULAR_WEIGHT>
309.328

> <EXACT_MASS>
309.090211986

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
33.82870459726075

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
12-methoxy-3,20-diazapentacyclo[11.7.0.0^{2,10}.0^{4,9}.0^{14,19}]icosa-1(20),2,4,6,8,10,12,14,16,18-decaene-11-carbonitrile

> <JCHEM_LOGP>
4.143343235666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-1.6604171524023306

> <JCHEM_POLAR_SURFACE_AREA>
57.739999999999995

> <JCHEM_REFRACTIVITY>
97.08040000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
12-methoxy-3,20-diazapentacyclo[11.7.0.0^{2,10}.0^{4,9}.0^{14,19}]icosa-1(20),2,4,6,8,10,12,14,16,18-decaene-11-carbonitrile

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       8.867   4.384   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       7.327   4.384   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.557   3.050   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.017   3.050   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.247   4.384   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       3.477   5.718   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       4.247   1.717   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.017   0.383   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.557   0.383   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.327   1.717   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.833   1.396   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.079   2.302   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      11.486   1.675   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.647   0.144   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.401  -0.762   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.994  -0.135   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       7.587  -0.762   0.000  0.00  0.00           N+0
HETATM   18  N   UNK     0       3.986  -0.762   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0       2.580  -0.135   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.173  -0.762   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.073   0.144   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       0.088   1.675   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.495   2.302   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.741   1.396   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10                                                  
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4    8   24                                                  
CONECT    8    7    9   18                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9    3   11                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16    9                                                       
CONECT   18    8   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   19    7                                                  
MASTER        0    0    0    0    0    0    0    0   24    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₁₁N₃O

Average Mass

309.3280 Da

Monoisotopic Mass

309.09021 Da

IUPAC Name

12-methoxy-3,20-diazapentacyclo[11.7.0.0^{2,10}.0^{4,9}.0^{14,19}]icosa-1(20),2,4,6,8,10,12,14,16,18-decaene-11-carbonitrile

Traditional Name

12-methoxy-3,20-diazapentacyclo[11.7.0.0^{2,10}.0^{4,9}.0^{14,19}]icosa-1(20),2,4,6,8,10,12,14,16,18-decaene-11-carbonitrile

CAS Registry Number

Not Available

SMILES

COC1=C2C3=CC=CC=C3N=C2C2=NC3=CC=CC=C3C2=C1C#N

InChI Identifier

InChI=1S/C20H11N3O/c1-24-20-13(10-21)16-11-6-2-4-8-14(11)22-18(16)19-17(20)12-7-3-5-9-15(12)23-19/h2-9H,1H3

InChI Key

RDDOSCZPCHSCJF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolocarbazoles. These are polycyclic aromatic compounds containing an indole fused to a carbazole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Indolocarbazoles

Alternative Parents

Substituents

Indolocarbazole
Anisole
Phenol ether
Alkyl aryl ether
Benzenoid
Ether
Azacycle
Carbonitrile
Nitrile
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Cyanide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.14	ChemAxon
pKa (Strongest Basic)	-1.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	57.74 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	97.08 m³·mol⁻¹	ChemAxon
Polarizability	33.83 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

19982952

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21121440

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-methoxyindolo[2,3-a]carbazole-5-carbonitrile (NP0213858)

MOL for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

3D MOL for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

3D SDF for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

3D-SDF for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

PDB for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

3D PDB for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

SMILES for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

INCHI for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

Structure for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)

3D Structure for NP0213858 (6-methoxyindolo[2,3-a]carbazole-5-carbonitrile)