NP-MRD: Showing NP-Card for 1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one (NP0213737)

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Record Information

Version

2.0

Created at

2022-09-05 12:48:41 UTC

Updated at

2022-09-05 12:48:41 UTC

NP-MRD ID

NP0213737

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one

Description

1-Hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-3H,7H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrazin-4-one belongs to the class of organic compounds known as 2,2-dimethyl-1-benzopyrans. These are organic compounds containing a 1-benzopyran moiety that carries two methyl groups at the 2-position. 1-Hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-3H,7H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3H,4H,6H,7H,8H,8aH-pyrrolo[1,2-a]pyrazin-4-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004241501372D          

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 26 27  2  0  0  0  0
 12 27  1  0  0  0  0
 16 27  1  0  0  0  0
 12 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
 31 32  2  0  0  0  0
 10 33  1  0  0  0  0
 33 34  1  0  0  0  0
  3 34  1  0  0  0  0
 34 35  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0213737

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC12CCCN1C(=O)C(CC1(C(=O)NC3=C4C=CC(C)(C)OC4=CC=C13)C(C)(C)C=C)NC2=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H33N3O5/c1-7-24(2,3)26(15-18-21(31)30-14-8-12-27(30,34-6)23(33)28-18)17-9-10-19-16(20(17)29-22(26)32)11-13-25(4,5)35-19/h7,9-11,13,18H,1,8,12,14-15H2,2-6H3,(H,28,33)(H,29,32)

> <INCHI_KEY>
OCKJJINPDXBXCN-UHFFFAOYSA-N

> <FORMULA>
C27H33N3O5

> <MOLECULAR_WEIGHT>
479.577

> <EXACT_MASS>
479.242021175

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
49.83441837633393

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{[7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-2-oxo-1H,2H,3H,7H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-octahydropyrrolo[1,2-a]piperazine-1,4-dione

> <ALOGPS_LOGP>
2.95

> <JCHEM_LOGP>
2.9901066883333325

> <ALOGPS_LOGS>
-4.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.585031715970612

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.593294993908199

> <JCHEM_PKA_STRONGEST_BASIC>
-3.422639960220717

> <JCHEM_POLAR_SURFACE_AREA>
96.97

> <JCHEM_REFRACTIVITY>
133.53130000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.40e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{[7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-2-oxo-1H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-tetrahydro-2H-pyrrolo[1,2-a]piperazine-1,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      -3.449   2.321   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.583   1.047   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -3.253  -0.339   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.247   0.837   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.673   0.255   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.560  -1.281   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0      -4.064  -1.648   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      -3.336  -3.005   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -4.148  -4.314   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -1.797  -3.053   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.069  -4.410   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.470  -4.459   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.357  -2.923   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -0.225  -1.497   0.000  0.00  0.00           O+0
HETATM   15  N   UNK     0       1.783  -2.341   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       2.777  -3.517   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.316  -3.565   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.128  -2.256   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.667  -2.304   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.395  -3.661   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.605  -2.708   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.543  -4.687   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.584  -4.970   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.044  -4.922   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.233  -6.231   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.694  -6.183   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.966  -4.826   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.261  -5.984   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       1.787  -6.193   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -1.264  -5.776   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.053  -7.510   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.373  -8.092   0.000  0.00  0.00           C+0
HETATM   33  N   UNK     0      -0.986  -1.744   0.000  0.00  0.00           N+0
HETATM   34  C   UNK     0      -1.714  -0.387   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -0.902   0.922   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    7   34                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    3    8                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   33                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   27   28                                             
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   27                                                  
CONECT   17   16   18   24                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22   23                                             
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   20   24                                                       
CONECT   24   23   17   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   12   16                                                  
CONECT   28   12   29   30   31                                             
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   28   32                                                       
CONECT   32   31                                                            
CONECT   33   10   34                                                       
CONECT   34   33    3   35                                                  
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   78    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₃N₃O₅

Average Mass

479.5770 Da

Monoisotopic Mass

479.24202 Da

IUPAC Name

3-{[7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-2-oxo-1H,2H,3H,7H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-octahydropyrrolo[1,2-a]piperazine-1,4-dione

Traditional Name

3-{[7,7-dimethyl-3-(2-methylbut-3-en-2-yl)-2-oxo-1H-chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-tetrahydro-2H-pyrrolo[1,2-a]piperazine-1,4-dione

CAS Registry Number

Not Available

SMILES

COC12CCCN1C(=O)C(CC1(C(=O)NC3=C4C=CC(C)(C)OC4=CC=C13)C(C)(C)C=C)NC2=O

InChI Identifier

InChI=1S/C27H33N3O5/c1-7-24(2,3)26(15-18-21(31)30-14-8-12-27(30,34-6)23(33)28-18)17-9-10-19-16(20(17)29-22(26)32)11-13-25(4,5)35-19/h7,9-11,13,18H,1,8,12,14-15H2,2-6H3,(H,28,33)(H,29,32)

InChI Key

OCKJJINPDXBXCN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2,2-dimethyl-1-benzopyrans. These are organic compounds containing a 1-benzopyran moiety that carries two methyl groups at the 2-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

2,2-dimethyl-1-benzopyrans

Alternative Parents

Substituents

2,2-dimethyl-1-benzopyran
Alpha-amino acid or derivatives
3-alkylindole
Indole or derivatives
Alkyl aryl ether
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Cyclic carboximidic acid
Lactam
Carboxamide group
Azacycle
Oxacycle
Ether
Carboxylic acid derivative
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Hydrocarbon derivative
Organic oxygen compound
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Organic oxide
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.95	ALOGPS
logP	2.99	ChemAxon
logS	-4.5	ALOGPS
pKa (Strongest Acidic)	10.59	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	96.97 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	133.53 m³·mol⁻¹	ChemAxon
Polarizability	49.83 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one (NP0213737)

MOL for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

3D MOL for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

3D SDF for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

3D-SDF for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

PDB for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

3D PDB for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

SMILES for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

INCHI for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

Structure for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)

3D Structure for NP0213737 (1-hydroxy-3-{[2-hydroxy-7,7-dimethyl-3-(2-methylbut-3-en-2-yl)chromeno[5,6-b]pyrrol-3-yl]methyl}-8a-methoxy-3h,6h,7h,8h-pyrrolo[1,2-a]pyrazin-4-one)