NP-MRD: Showing NP-Card for 15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one (NP0213630)

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Record Information

Version

2.0

Created at

2022-09-05 12:40:33 UTC

Updated at

2022-09-05 12:40:33 UTC

NP-MRD ID

NP0213630

Secondary Accession Numbers

None

Natural Product Identification

Common Name

15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one

Description

CHEMBL157071 belongs to the class of organic compounds known as difurocoumarins. These are polycyclic aromatic compounds containing difurocoumarin moiety consisting of a system of two fused furan rings, which is linked to the benzene ring of a coumarin. 15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one is found in Micromelum falcatum and Micromelum minutum. Based on a literature review very few articles have been published on CHEMBL157071.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 28 31  0  0  0  0  0  0  0  0999 V2000
   -1.9405    1.6402   -0.9084 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2334    0.7624    0.0202 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5816    0.2606    0.3471 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4577   -0.8828    1.0825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1413   -1.2090    1.2267 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6394   -2.0597    0.2107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3166   -1.6922   -0.0993 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7212   -2.3523   -0.7223 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9585   -1.7700   -0.9166 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1655   -0.4964   -0.4779 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4137    0.0787   -0.6788 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6212    1.3679   -0.2341 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5574    1.9911    0.3832 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7046    3.1674    0.8036 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3947    1.4142    0.5539 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1308    0.1830    0.1519 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0923   -0.4074    0.3380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3293    0.0648    0.9547 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6889    2.0963   -1.5466 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9123    1.9473   -1.0734 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0781    1.0281    1.0088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2469    0.1671   -0.5329 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8880   -1.6307    2.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5343   -3.3707   -1.0657 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7225   -2.3725   -1.4220 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2227   -0.4348   -1.1642 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5649    1.8812   -0.3545 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1657    0.6281    1.8969 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  3
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18  2  1  0
 18  5  1  0
 17  7  1  0
 16 10  1  0
  1 19  1  0
  1 20  1  0
  3 21  1  0
  3 22  1  0
  5 23  1  1
  8 24  1  0
  9 25  1  0
 11 26  1  0
 12 27  1  0
 18 28  1  1
M  END


  Mrv1652309052214402D          

 18 21  0  0  0  0            999 V2000
    4.3715   -1.4921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9707   -0.7710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1518   -0.6713    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9935    0.1383    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7146    0.5391    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0624    1.2872    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8814    1.1876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5034    1.7295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2837    1.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4421    0.6521    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2224    0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3807   -0.4253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7587   -0.9672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9170   -1.7769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9784   -0.6995    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8200    0.1102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0397    0.3779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3186   -0.0229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  2  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
  2 18  1  0  0  0  0
  5 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0213630

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C=C1COC2OC3=CC=C4C=CC(=O)OC4=C3C12

> <INCHI_IDENTIFIER>
InChI=1S/C14H10O4/c1-7-6-16-14-11(7)12-9(17-14)4-2-8-3-5-10(15)18-13(8)12/h2-5,11,14H,1,6H2

> <INCHI_KEY>
LBKZVXDBYGRCRP-UHFFFAOYSA-N

> <FORMULA>
C14H10O4

> <MOLECULAR_WEIGHT>
242.23

> <EXACT_MASS>
242.057908802

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
28

> <JCHEM_AVERAGE_POLARIZABILITY>
23.457523760065392

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0^{2,7}.0^{12,16}]hexadeca-1,5,7,9-tetraen-4-one

> <JCHEM_LOGP>
1.8168493736666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.268069420572151

> <JCHEM_POLAR_SURFACE_AREA>
44.760000000000005

> <JCHEM_REFRACTIVITY>
64.06980000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0^{2,7}.0^{12,16}]hexadeca-1,5,7,9-tetraen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       8.160  -2.785   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.412  -1.439   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.883  -1.253   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       5.588   0.258   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.934   1.006   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       7.583   2.403   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       9.112   2.217   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.273   3.228   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      11.730   2.729   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.025   1.217   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.482   0.718   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.777  -0.794   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      12.616  -1.805   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      12.912  -3.317   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      11.160  -1.306   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.864   0.206   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.407   0.705   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.061  -0.043   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   18                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   17                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   16                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   10   17                                                  
CONECT   17   16    7   18                                                  
CONECT   18   17    2    5                                                  
MASTER        0    0    0    0    0    0    0    0   18    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₁₀O₄

Average Mass

242.2300 Da

Monoisotopic Mass

242.05791 Da

IUPAC Name

15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0^{2,7}.0^{12,16}]hexadeca-1,5,7,9-tetraen-4-one

Traditional Name

15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0^{2,7}.0^{12,16}]hexadeca-1,5,7,9-tetraen-4-one

CAS Registry Number

Not Available

SMILES

C=C1COC2OC3=CC=C4C=CC(=O)OC4=C3C12

InChI Identifier

InChI=1S/C14H10O4/c1-7-6-16-14-11(7)12-9(17-14)4-2-8-3-5-10(15)18-13(8)12/h2-5,11,14H,1,6H2

InChI Key

LBKZVXDBYGRCRP-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromelum falcatum	LOTUS Database	35616633
Micromelum minutum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as difurocoumarins. These are polycyclic aromatic compounds containing difurocoumarin moiety consisting of a system of two fused furan rings, which is linked to the benzene ring of a coumarin.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Difurocoumarins

Direct Parent

Difurocoumarins

Alternative Parents

Substituents

Difurocoumarin
Angular furanocoumarin
Furanocoumarin
Benzopyran
1-benzopyran
Coumaran
Pyranone
Pyran
Benzenoid
Oxolane
Heteroaromatic compound
Lactone
Acetal
Oxacycle
Organoheterocyclic compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.82	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	44.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	64.07 m³·mol⁻¹	ChemAxon
Polarizability	23.46 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23228319

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44371733

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one (NP0213630)

MOL for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

3D MOL for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

3D SDF for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

3D-SDF for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

PDB for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

3D PDB for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

SMILES for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

INCHI for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

Structure for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)

3D Structure for NP0213630 (15-methylidene-3,11,13-trioxatetracyclo[8.6.0.0²,⁷.0¹²,¹⁶]hexadeca-1,5,7,9-tetraen-4-one)