NP-MRD: Showing NP-Card for 4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol (NP0213505)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-05 12:31:00 UTC

Updated at

2022-09-05 12:31:00 UTC

NP-MRD ID

NP0213505

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol

Description

Cyclobakuchiol B belongs to the class of organic compounds known as cyclohexylphenols. Cyclohexylphenols are compounds containing a cyclohexane lined to a phenol group. 4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol is found in Otholobium glandulosum. 4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol was first documented in 2014 (PMID: 24273103). Based on a literature review very few articles have been published on Cyclobakuchiol B (PMID: 33770117).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 44  0  0  0  0  0  0  0  0999 V2000
   -1.0236   -3.0312   -2.2409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6277   -1.7973   -2.5051 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2004   -0.6312   -1.6833 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6650   -0.6059   -2.1869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5029    0.5724   -2.1540 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0178    1.4976   -1.0803 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8102    1.2702    0.1318 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8042    2.3949    1.1013 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8455    3.1856    1.2973 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3927    2.7376    1.9365 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5839   -0.0719    0.6839 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7831   -0.5089    1.0235 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7755   -0.8850    0.1704 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0046   -1.2703    0.6458 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3047   -1.3000    1.9946 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5690   -1.7005    2.4071 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3203   -0.9254    2.8772 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1056   -0.5455    2.3857 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1108   -1.0774   -0.2890 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6120   -3.8388   -2.8264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7352   -3.2817   -1.4728 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0865   -1.6365   -3.2890 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3282   -0.0426   -1.5346 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0585   -1.6476   -2.2325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6833   -0.2137   -3.2277 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3195    0.3243   -2.8902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2029    1.1796   -2.7717 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1550    2.5810   -1.3732 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0905    1.4158   -0.9942 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8671    1.3283   -0.2932 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7900    3.9894    2.0042 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7694    3.0455    0.7583 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6720    3.8216    1.7594 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2297    2.5638    2.9992 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2925    2.2017    1.5772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2351   -0.1173    1.6239 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5665   -0.8818   -0.8948 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7822   -1.5677   -0.0874 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2351   -1.9597    1.6960 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5385   -0.9439    3.9290 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3545   -0.2543    3.1379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1860   -1.2874    0.0419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6440   -2.0860   -0.1548 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  8  1  0
  8  9  2  3
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  3  1  0
  3  4  1  0
  3 19  1  0
 19 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 15 17  1  0
 17 18  2  0
  3  2  1  6
  2  1  2  3
 11  7  1  0
 18 12  1  0
 10 33  1  0
 10 34  1  0
 10 35  1  0
  9 31  1  0
  9 32  1  0
  7 30  1  6
  6 28  1  0
  6 29  1  0
  5 26  1  0
  5 27  1  0
  4 23  1  0
  4 24  1  0
  4 25  1  0
 19 42  1  0
 19 43  1  0
 11 36  1  1
 13 37  1  0
 14 38  1  0
 16 39  1  0
 17 40  1  0
 18 41  1  0
  2 22  1  0
  1 20  1  0
  1 21  1  0
M  END


  Mrv1652309052214312D          

 19 20  0  0  1  0            999 V2000
    0.9626    0.1697    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2448   -0.6055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1842   -0.6055    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 12 18  1  0  0  0  0
 11 19  1  0  0  0  0
  3 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0213505

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=C)[C@H]1CC[C@](C)(C[C@H]1C1=CC=C(O)C=C1)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C18H24O/c1-5-18(4)11-10-16(13(2)3)17(12-18)14-6-8-15(19)9-7-14/h5-9,16-17,19H,1-2,10-12H2,3-4H3/t16-,17+,18-/m1/s1

> <INCHI_KEY>
DUTYKARAVUNUBK-FGTMMUONSA-N

> <FORMULA>
C18H24O

> <MOLECULAR_WEIGHT>
256.389

> <EXACT_MASS>
256.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
30.57522646345416

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-[(1R,2S,5R)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol

> <JCHEM_LOGP>
5.183277679

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.224305279111936

> <JCHEM_PKA_STRONGEST_BASIC>
-5.448833175858021

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
81.37500000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
4-[(1R,2S,5R)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       1.797   0.317   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.324  -1.130   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.344  -1.130   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   19                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   11                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    7   12   19                                                  
CONECT   12   11   13   18                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   12                                                       
CONECT   19   11    3                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₄O

Average Mass

256.3890 Da

Monoisotopic Mass

256.18272 Da

IUPAC Name

4-[(1R,2S,5R)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol

Traditional Name

4-[(1R,2S,5R)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol

CAS Registry Number

Not Available

SMILES

CC(=C)[C@H]1CC[C@](C)(C[C@H]1C1=CC=C(O)C=C1)C=C

InChI Identifier

InChI=1S/C18H24O/c1-5-18(4)11-10-16(13(2)3)17(12-18)14-6-8-15(19)9-7-14/h5-9,16-17,19H,1-2,10-12H2,3-4H3/t16-,17+,18-/m1/s1

InChI Key

DUTYKARAVUNUBK-FGTMMUONSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Otholobium glandulosum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclohexylphenols. Cyclohexylphenols are compounds containing a cyclohexane lined to a phenol group.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Cyclohexylphenols

Direct Parent

Cyclohexylphenols

Alternative Parents

Substituents

Cyclohexylphenol
P-menthane monoterpenoid
Monoterpenoid
Monocyclic monoterpenoid
Aromatic monoterpenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.18	ChemAxon
pKa (Strongest Acidic)	10.22	ChemAxon
pKa (Strongest Basic)	-5.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	81.38 m³·mol⁻¹	ChemAxon
Polarizability	30.58 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102105845

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Shoji M, Esumi T, Tanaka N, Takeuchi M, Yamaji S, Watanabe M, Takahashi E, Kido H, Yamamoto M, Kuzuhara T: Organic synthesis and anti-influenza A virus activity of cyclobakuchiols A, B, C, and D. PLoS One. 2021 Mar 26;16(3):e0248960. doi: 10.1371/journal.pone.0248960. eCollection 2021. [PubMed:33770117 ]
Kawashima H, Kaneko Y, Sakai M, Kobayashi Y: Synthesis of cyclobakuchiols A, B, and C by using conformation-controlled stereoselective reactions. Chemistry. 2014 Jan 3;20(1):272-8. doi: 10.1002/chem.201303538. Epub 2013 Nov 22. [PubMed:24273103 ]
LOTUS database [Link]

Showing NP-Card for 4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol (NP0213505)

MOL for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

3D MOL for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

3D SDF for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

3D-SDF for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

PDB for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

3D PDB for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

SMILES for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

INCHI for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

Structure for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)

3D Structure for NP0213505 (4-[(1r,2s,5r)-5-ethenyl-5-methyl-2-(prop-1-en-2-yl)cyclohexyl]phenol)