NP-MRD: Showing NP-Card for 3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol (NP0213121)

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Record Information

Version

2.0

Created at

2022-09-05 12:00:23 UTC

Updated at

2022-09-05 12:00:23 UTC

NP-MRD ID

NP0213121

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol

Description

Mukoenine A, also known as girinimbilol, belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring. Mukoenine A is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Mukoenine A has been detected, but not quantified in, herbs and spices. 3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol is found in Murraya koenigii. This could make mukoenine a a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
    3.7478    0.1112   -1.3455 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8573    0.0903    0.1253 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1438   -0.2743    0.7450 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8276    0.3821    0.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5700    0.7274    0.2784 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3911   -0.1074    0.4648 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3178   -1.3361    1.0278 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4006   -1.9672    1.5348 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9256   -2.0168    1.1033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9317   -3.3413    1.7253 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0383   -1.4327    0.6088 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0080   -0.1792    0.0253 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7999    0.4700   -0.0410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0618    1.6503   -0.6477 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3716    1.7476   -0.9535 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1497    2.7151   -1.5661 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4846    2.5772   -1.7699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1128    1.4103   -1.3454 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3573    0.4348   -0.7336 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0035    0.5963   -0.5377 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8791   -0.3998   -1.7564 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6300    1.1922   -1.6485 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6826   -0.2360   -1.8373 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5161    0.5560    1.3762 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0196   -1.1636    1.4360 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9212   -0.5404   -0.0043 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9663    0.3746    1.9654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7408    0.9489   -0.8287 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2723    1.7517    0.6902 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3332   -1.8034    1.6292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2141   -3.3007    2.8075 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0350   -3.8648    1.6918 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6398   -3.9999    1.1593 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0164   -1.9158    0.6409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3525    2.3775   -0.8465 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6618    3.6131   -1.8905 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1018    3.3486   -2.2578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1864    1.2716   -1.4980 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8344   -0.4676   -0.4055 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
  6 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 12  1  0
 12 11  2  0
 11  9  1  0
  9 10  1  0
  9  7  2  0
  7  8  1  0
  7  6  1  0
 12 13  1  0
 20 15  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  3 25  1  0
  3 26  1  0
  4 27  1  0
  5 28  1  0
  5 29  1  0
 14 35  1  0
 16 36  1  0
 17 37  1  0
 18 38  1  0
 19 39  1  0
 11 34  1  0
 10 31  1  0
 10 32  1  0
 10 33  1  0
  8 30  1  0
M  END


  Mrv0541 05061312082D          

 20 22  0  0  0  0            999 V2000
   -0.3053   -2.7260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6643   -2.2844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3896    1.6387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7054    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9604    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8985    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4084   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6024   -1.3283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2046   -1.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694    1.1971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8573   -2.1129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1624    1.0256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3464    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4595   -0.3721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5214    0.5840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6014   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2665   -0.2006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0925    0.2410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9339   -0.6855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8995    0.0694    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  2  0  0  0  0
  6  4  1  0  0  0  0
  7  5  1  0  0  0  0
  9  8  1  0  0  0  0
 11  1  1  0  0  0  0
 11  2  1  0  0  0  0
 11  8  2  0  0  0  0
 12  3  1  0  0  0  0
 12 10  1  0  0  0  0
 13  6  2  0  0  0  0
 14  9  1  0  0  0  0
 15 10  2  0  0  0  0
 15 13  1  0  0  0  0
 16  7  2  0  0  0  0
 16 13  1  0  0  0  0
 17 14  2  0  0  0  0
 17 15  1  0  0  0  0
 18 12  2  0  0  0  0
 18 14  1  0  0  0  0
 19 16  1  0  0  0  0
 19 17  1  0  0  0  0
 20 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0213121

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC1=C2NC3=CC=CC=C3C2=CC(C)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H19NO/c1-11(2)8-9-14-17-15(10-12(3)18(14)20)13-6-4-5-7-16(13)19-17/h4-8,10,19-20H,9H2,1-3H3

> <INCHI_KEY>
PURITTXNCHNYEP-UHFFFAOYSA-N

> <FORMULA>
C18H19NO

> <MOLECULAR_WEIGHT>
265.3496

> <EXACT_MASS>
265.146664235

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
31.551699993510486

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-methyl-1-(3-methylbut-2-en-1-yl)-9H-carbazol-2-ol

> <ALOGPS_LOGP>
4.75

> <JCHEM_LOGP>
5.029308756333334

> <ALOGPS_LOGS>
-5.11

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.660883724139364

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.851400162994677

> <JCHEM_PKA_STRONGEST_BASIC>
-6.077805700662293

> <JCHEM_POLAR_SURFACE_AREA>
36.019999999999996

> <JCHEM_REFRACTIVITY>
84.73710000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.07e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-methyl-1-(3-methylbut-2-en-1-yl)-9H-carbazol-2-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -0.570  -5.089   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.107  -4.264   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.727   3.059   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.917   1.914   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.393   0.450   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.411   2.235   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.362  -0.695   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.124  -2.479   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.382  -2.159   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.810   2.235   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.600  -3.944   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.303   1.914   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.380   1.090   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.858  -0.695   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.840   1.090   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.856  -0.374   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.364  -0.374   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.173   0.450   0.000  0.00  0.00           C+0
HETATM   19  N   UNK     0       3.610  -1.280   0.000  0.00  0.00           N+0
HETATM   20  O   UNK     0      -1.679   0.130   0.000  0.00  0.00           O+0
CONECT    1   11                                                            
CONECT    2   11                                                            
CONECT    3   12                                                            
CONECT    4    5    6                                                       
CONECT    5    4    7                                                       
CONECT    6    4   13                                                       
CONECT    7    5   16                                                       
CONECT    8    9   11                                                       
CONECT    9    8   14                                                       
CONECT   10   12   15                                                       
CONECT   11    1    2    8                                                  
CONECT   12    3   10   18                                                  
CONECT   13    6   15   16                                                  
CONECT   14    9   17   18                                                  
CONECT   15   10   13   17                                                  
CONECT   16    7   13   19                                                  
CONECT   17   14   15   19                                                  
CONECT   18   12   14   20                                                  
CONECT   19   16   17                                                       
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   44    0
END

View in JSmol

Synonyms

Value	Source
2-Hydroxy-3-methyl-1-prenylcarbazole	HMDB
3-Methyl-1-(3-methyl-2-butenyl)-9H-carbazol-2-ol, 9ci	HMDB
Girinimbilol	HMDB

Chemical Formula

C₁₈H₁₉NO

Average Mass

265.3496 Da

Monoisotopic Mass

265.14666 Da

IUPAC Name

3-methyl-1-(3-methylbut-2-en-1-yl)-9H-carbazol-2-ol

Traditional Name

3-methyl-1-(3-methylbut-2-en-1-yl)-9H-carbazol-2-ol

CAS Registry Number

Not Available

SMILES

CC(C)=CCC1=C2NC3=CC=CC=C3C2=CC(C)=C1O

InChI Identifier

InChI=1S/C18H19NO/c1-11(2)8-9-14-17-15(10-12(3)18(14)20)13-6-4-5-7-16(13)19-17/h4-8,10,19-20H,9H2,1-3H3

InChI Key

PURITTXNCHNYEP-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Murraya koenigii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carbazoles. Carbazoles are compounds containing a three ring system containing a pyrrole ring fused on either side to a benzene ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Carbazoles

Direct Parent

Carbazoles

Alternative Parents

Substituents

Carbazole
Hydroxyindole
Indole
Benzenoid
Heteroaromatic compound
Pyrrole
Azacycle
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.75	ALOGPS
logP	5.03	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	8.85	ChemAxon
pKa (Strongest Basic)	-6.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	36.02 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	84.74 m³·mol⁻¹	ChemAxon
Polarizability	31.55 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0040785

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB020601

KNApSAcK ID

Not Available

Chemspider ID

5020

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5209

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol (NP0213121)

MOL for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

3D MOL for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

3D SDF for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

3D-SDF for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

PDB for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

3D PDB for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

SMILES for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

INCHI for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

Structure for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)

3D Structure for NP0213121 (3-methyl-1-(3-methylbut-2-en-1-yl)-9h-carbazol-2-ol)