NP-MRD: Showing NP-Card for (2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol (NP0213074)

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Record Information

Version

2.0

Created at

2022-09-05 11:56:14 UTC

Updated at

2022-09-05 11:56:14 UTC

NP-MRD ID

NP0213074

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol

Description

(2S,3R,4S,5S)-2-{[(1S,3R,8S,10R,18R,19R,21S,22R)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]Tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol is found in Actaea cimicifuga. Based on a literature review very few articles have been published on (2S,3R,4S,5S)-2-{[(1S,3R,8S,10R,18R,19R,21S,22R)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]Tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052213562D          

 43 49  0  0  1  0            999 V2000
    2.5625   -0.4015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9922    0.1947    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1555    0.0193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5847    0.6651    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1388    1.1632    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6102    1.6929    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0982    2.3876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9070    2.1903    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7570    3.0016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5857    2.6594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3312    2.3062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9324    2.8712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7490    2.7535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1660    2.0417    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8695    1.2718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3880    0.6301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2  1  1  6  0  0  0
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  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 39 40  1  6  0  0  0
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 40 43  1  0  0  0  0
M  END

     RDKit          3D

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 36 84  1  0
 36 85  1  0
 36 86  1  0
 37 87  1  6
 16 62  1  0
 17 63  1  0
 17 64  1  0
 18 65  1  1
 20 66  1  1
 22 67  1  0
 22 68  1  0
 23 69  1  1
 24 70  1  0
 25 71  1  1
 26 72  1  0
 27 73  1  6
 28 74  1  0
 30 75  1  0
 30 76  1  0
 30 77  1  0
 31 78  1  0
 31 79  1  0
 31 80  1  0
 39 88  1  6
 41 89  1  0
 41 90  1  0
 41 91  1  0
 42 92  1  0
 42 93  1  0
 42 94  1  0
 43 95  1  0
M  END


  Mrv1652309052213562D          

 43 49  0  0  1  0            999 V2000
    2.5625   -0.4015    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9922    0.1947    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1555    0.0193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5847    0.6651    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1388    1.1632    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6102    1.6929    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0982    2.3876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9070    2.1903    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7570    3.0016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5857    2.6594    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3312    2.3062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9324    2.8712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7490    2.7535    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1660    2.0417    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8695    1.2718    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3880    0.6301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2030    0.7582    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4995    1.5281    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.3145    1.6563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.8330    1.0146    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.6479    1.1428    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1664    0.5010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8699   -0.2688    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.3884   -0.9105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0550   -0.3970    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.7585   -1.1669    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5365    0.2447    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7215    0.1165    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9810    2.1698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6042    2.7104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8813    2.9888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0827    1.0236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3981    1.4840    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7195    1.0149    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9739    1.3681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9599    0.5432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2083    1.0366    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7860    2.0531    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1772    1.4255    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6399    1.5398    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4569    1.6542    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5255    2.3569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7542    0.7228    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 20 27  1  0  0  0  0
 27 28  1  1  0  0  0
 18 29  1  0  0  0  0
 14 29  1  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 15 32  1  0  0  0  0
 32 33  1  0  0  0  0
 11 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
  8 35  1  0  0  0  0
 35 36  1  0  0  0  0
 37 35  1  1  0  0  0
  2 37  1  0  0  0  0
  6 37  1  0  0  0  0
  6 38  1  0  0  0  0
 38 39  1  0  0  0  0
  4 39  1  0  0  0  0
 39 40  1  6  0  0  0
 40 41  1  0  0  0  0
 40 42  1  0  0  0  0
 40 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0213074

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C[C@@H]2O[C@@]3(C[C@@]4(C)CC5=CC[C@H]6C(CC5=CC4(C)[C@@H]13)=CC[C@@H](O[C@@H]1OC[C@H](O)[C@H](O)[C@H]1O)C6(C)C)O[C@H]2C(C)(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C35H52O8/c1-18-12-24-29(32(4,5)39)43-35(42-24)17-33(6)14-20-8-10-22-19(13-21(20)15-34(33,7)28(18)35)9-11-25(31(22,2)3)41-30-27(38)26(37)23(36)16-40-30/h8-9,15,18,22-30,36-39H,10-14,16-17H2,1-7H3/t18-,22+,23+,24+,25-,26+,27-,28-,29-,30+,33-,34?,35+/m1/s1

> <INCHI_KEY>
AYQRZIHVNBUHFB-MWDBCOLPSA-N

> <FORMULA>
C35H52O8

> <MOLECULAR_WEIGHT>
600.793

> <EXACT_MASS>
600.366218634

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
95

> <JCHEM_AVERAGE_POLARIZABILITY>
66.53668842864576

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S)-2-{[(1S,3R,8S,10R,18R,19R,21S,22R)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0^{1,18}.0^{3,17}.0^{5,15}.0^{8,13}]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol

> <JCHEM_LOGP>
3.2097559136666645

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.348177653782482

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.241832108233426

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1326518234069702

> <JCHEM_POLAR_SURFACE_AREA>
117.84000000000002

> <JCHEM_REFRACTIVITY>
163.00230000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S)-2-{[(1S,3R,8S,10R,18R,19R,21S,22R)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0^{1,18}.0^{3,17}.0^{5,15}.0^{8,13}]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       4.783  -0.749   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.719   0.363   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.157   0.036   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.091   1.241   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.126   2.171   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       3.006   3.160   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.917   4.457   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.426   4.089   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.146   5.603   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.693   4.964   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.085   4.305   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.207   5.360   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.731   5.140   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.510   3.811   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.956   2.374   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.924   1.176   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.446   1.415   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.999   2.852   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      15.520   3.092   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      16.488   1.894   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      18.009   2.133   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      18.977   0.935   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      18.424  -0.502   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      19.392  -1.700   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      16.903  -0.741   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      16.349  -2.178   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      15.935   0.457   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      14.413   0.218   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      13.031   4.050   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      14.195   5.059   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      12.845   5.579   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.488   1.911   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       8.210   2.770   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.943   1.894   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       5.551   2.554   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       5.525   1.014   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.122   1.935   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       1.467   3.833   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       0.331   2.661   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      -1.194   2.874   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -2.720   3.088   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      -0.981   4.399   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      -1.408   1.349   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   37                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   39                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   37   38                                             
CONECT    7    6    8                                                       
CONECT    8    7    9   10   35                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   33                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   29                                                  
CONECT   15   14   16   32                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   29                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   27                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   20   28                                                  
CONECT   28   27                                                            
CONECT   29   18   14   30   31                                             
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32   15   33                                                       
CONECT   33   32   11   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34    8   36   37                                             
CONECT   36   35                                                            
CONECT   37   35    2    6                                                  
CONECT   38    6   39                                                       
CONECT   39   38    4   40                                                  
CONECT   40   39   41   42   43                                             
CONECT   41   40                                                            
CONECT   42   40                                                            
CONECT   43   40                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   98    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₅₂O₈

Average Mass

600.7930 Da

Monoisotopic Mass

600.36622 Da

IUPAC Name

(2S,3R,4S,5S)-2-{[(1S,3R,8S,10R,18R,19R,21S,22R)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0^{1,18}.0^{3,17}.0^{5,15}.0^{8,13}]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@@H]2O[C@@]3(C[C@@]4(C)CC5=CC[C@H]6C(CC5=CC4(C)[C@@H]13)=CC[C@@H](O[C@@H]1OC[C@H](O)[C@H](O)[C@H]1O)C6(C)C)O[C@H]2C(C)(C)O

InChI Identifier

InChI=1S/C35H52O8/c1-18-12-24-29(32(4,5)39)43-35(42-24)17-33(6)14-20-8-10-22-19(13-21(20)15-34(33,7)28(18)35)9-11-25(31(22,2)3)41-30-27(38)26(37)23(36)16-40-30/h8-9,15,18,22-30,36-39H,10-14,16-17H2,1-7H3/t18-,22+,23+,24+,25-,26+,27-,28-,29-,30+,33-,34?,35+/m1/s1

InChI Key

AYQRZIHVNBUHFB-MWDBCOLPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Actaea cimicifuga	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
O-glycosyl compound
Glycosyl compound
Ketal
Oxepane
Oxane
Monosaccharide
Tertiary alcohol
Meta-dioxolane
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Polyol
Acetal
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.21	ChemAxon
pKa (Strongest Acidic)	12.24	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	117.84 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	163 m³·mol⁻¹	ChemAxon
Polarizability	66.54 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163190929

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol (NP0213074)

MOL for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

3D MOL for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

3D SDF for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

3D-SDF for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

PDB for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

3D PDB for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

SMILES for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

INCHI for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

Structure for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)

3D Structure for NP0213074 ((2s,3r,4s,5s)-2-{[(1s,3r,8s,10r,18r,19r,21s,22r)-22-(2-hydroxypropan-2-yl)-3,9,9,17,19-pentamethyl-23,24-dioxahexacyclo[19.2.1.0¹,¹⁸.0³,¹⁷.0⁵,¹⁵.0⁸,¹³]tetracosa-5,12,15-trien-10-yl]oxy}oxane-3,4,5-triol)