NP-MRD: Showing NP-Card for (3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione (NP0212639)

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Record Information

Version

2.0

Created at

2022-09-05 11:22:01 UTC

Updated at

2022-09-05 11:22:01 UTC

NP-MRD ID

NP0212639

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione

Description

(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. (3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione is found in Trichoderma virens. Based on a literature review very few articles have been published on (3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052213222D          

 28 29  0  0  1  0            999 V2000
    2.4256   -4.4877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -4.0752    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -3.2502    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9966   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2822   -3.2502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9966   -2.0127    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2822   -1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1808   -0.9683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4630   -0.1930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9327    0.4390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2148    1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0273    1.3575    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3095    2.1327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1219    2.2760    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4041    3.0512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8738    3.6832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0613    3.5400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1560    4.4585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6257    5.0905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5576    0.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2754   -0.0498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2414   -0.9683    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.0539   -1.1115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4256   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1401   -1.6002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4256   -2.8377    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1401   -3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 13 21  1  0  0  0  0
 21 22  2  0  0  0  0
 10 22  1  0  0  0  0
  8 23  1  6  0  0  0
 23 24  1  0  0  0  0
  8 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
  3 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END

     RDKit          3D

 56 57  0  0  0  0  0  0  0  0999 V2000
   -5.8713   -1.1919   -2.7961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5418   -0.1977   -1.3130 S   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1254   -1.2789    0.0585 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0490   -0.4483    1.3046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1073   -0.1949    1.9256 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8325    0.0439    1.7825 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7874    0.7203    3.0495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6255   -0.1518    0.9531 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4800    0.1978    1.7983 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1277    0.0192    1.3034 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5735   -1.1189    1.6552 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8595   -1.3741    1.2082 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4571   -0.4494    0.3797 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7634   -0.6772   -0.0930 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3611    0.2932   -0.9489 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7085   -0.2096   -1.2773 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7735    0.5004   -0.9547 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6864    1.8120   -0.2613 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1188   -0.0212   -1.2902 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.7391    0.9128   -2.1432 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7498    0.6854    0.0338 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4746    0.9503    0.4696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7786    0.8611   -0.5420 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8109    2.6190   -0.2284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6623   -1.5577    0.5288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7882   -2.4203    0.6377 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8926   -1.9886   -0.1046 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8693   -3.1790   -0.9300 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3045   -0.5359   -3.5778 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5932   -1.9893   -2.5342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9314   -1.6557   -3.1563 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9395   -2.0218    0.2299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2156    0.2070    3.8264 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3956    1.7596    2.8470 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8065    0.8819    3.4507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5501    1.2812    2.1321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5852   -0.3943    2.7607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1674   -1.8727    2.3196 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4100   -2.2603    1.4795 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4108    1.2727   -0.4138 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7223    0.4436   -1.8402 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8125   -1.1565   -1.7799 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6592    2.3125   -0.2394 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3500    1.6344    0.7665 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9839    2.5165   -0.7511 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0307   -0.9871   -1.7822 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.7623   -0.1182   -0.3894 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9554    0.5025   -3.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1951    1.4283   -0.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0878    1.8150    0.2190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8557    2.9950   -0.4286 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4866    2.9000    0.7896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1794    3.1325   -0.9883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5064   -4.0644   -0.3569 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1033   -2.9964   -1.7325 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8344   -3.3283   -1.4130 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3 27  1  0
 27 28  1  0
 27 25  1  0
 25 26  2  0
 25  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  1  0
 13 21  1  0
 21 22  2  0
  8 23  1  6
 23 24  1  0
  8  6  1  0
  6  7  1  0
  6  4  1  0
  4  5  2  0
  4  3  1  0
 22 10  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  3 32  1  1
 28 54  1  0
 28 55  1  0
 28 56  1  0
  9 36  1  0
  9 37  1  0
 11 38  1  0
 12 39  1  0
 15 40  1  0
 15 41  1  0
 16 42  1  0
 18 43  1  0
 18 44  1  0
 18 45  1  0
 19 46  1  0
 19 47  1  0
 20 48  1  0
 21 49  1  0
 22 50  1  0
 24 51  1  0
 24 52  1  0
 24 53  1  0
  7 33  1  0
  7 34  1  0
  7 35  1  0
M  END


  Mrv1652309052213222D          

 28 29  0  0  1  0            999 V2000
    2.4256   -4.4877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -4.0752    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -3.2502    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9966   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2822   -3.2502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9966   -2.0127    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.2822   -1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1808   -0.9683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4630   -0.1930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9327    0.4390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2148    1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0273    1.3575    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3095    2.1327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1219    2.2760    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4041    3.0512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8738    3.6832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0613    3.5400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1560    4.4585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6257    5.0905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5576    0.7255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2754   -0.0498    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2414   -0.9683    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.0539   -1.1115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4256   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1401   -1.6002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4256   -2.8377    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1401   -3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 13 21  1  0  0  0  0
 21 22  2  0  0  0  0
 10 22  1  0  0  0  0
  8 23  1  6  0  0  0
 23 24  1  0  0  0  0
  8 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
  3 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0212639

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CS[C@H]1N(C)C(=O)[C@@](CC2=CC=C(OC\C=C(/C)CO)C=C2)(SC)N(C)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H28N2O4S2/c1-14(13-23)10-11-26-16-8-6-15(7-9-16)12-20(28-5)19(25)21(2)18(27-4)17(24)22(20)3/h6-10,18,23H,11-13H2,1-5H3/b14-10+/t18-,20-/m1/s1

> <INCHI_KEY>
LAPJSFKZTWJPRA-LQFRORHJSA-N

> <FORMULA>
C20H28N2O4S2

> <MOLECULAR_WEIGHT>
424.57

> <EXACT_MASS>
424.149049738

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
44.5488306955194

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione

> <JCHEM_LOGP>
2.691389307000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.08997547211486

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.1026189024006

> <JCHEM_PKA_STRONGEST_BASIC>
-2.730377866080948

> <JCHEM_POLAR_SURFACE_AREA>
70.08

> <JCHEM_REFRACTIVITY>
116.2766

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0       4.528  -8.377   0.000  0.00  0.00           C+0
HETATM    2  S   UNK     0       3.194  -7.607   0.000  0.00  0.00           S+0
HETATM    3  C   UNK     0       3.194  -6.067   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.860  -5.297   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.527  -6.067   0.000  0.00  0.00           O+0
HETATM    6  N   UNK     0       1.860  -3.757   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       0.527  -2.987   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.194  -2.987   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.204  -1.807   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.731  -0.360   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.741   0.819   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.268   2.267   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.784   2.534   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       4.311   3.981   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.828   4.249   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.354   5.696   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.364   6.875   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.848   6.608   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.891   8.322   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       4.901   9.502   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.774   1.354   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.247  -0.093   0.000  0.00  0.00           C+0
HETATM   23  S   UNK     0       4.184  -1.807   0.000  0.00  0.00           S+0
HETATM   24  C   UNK     0       5.701  -2.075   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.528  -3.757   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.861  -2.987   0.000  0.00  0.00           O+0
HETATM   27  N   UNK     0       4.528  -5.297   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       5.861  -6.067   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   27                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   23   25                                             
CONECT    9    8   10                                                       
CONECT   10    9   11   22                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   21                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19                                                            
CONECT   21   13   22                                                       
CONECT   22   21   10                                                       
CONECT   23    8   24                                                       
CONECT   24   23                                                            
CONECT   25    8   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25    3   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   58    0
END

View in JSmol

Synonyms

Value	Source
(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulphanyl)piperazine-2,5-dione	Generator

Chemical Formula

C₂₀H₂₈N₂O₄S₂

Average Mass

424.5700 Da

Monoisotopic Mass

424.14905 Da

IUPAC Name

(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione

Traditional Name

(3R,6R)-3-[(4-{[(2E)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione

CAS Registry Number

Not Available

SMILES

CS[C@H]1N(C)C(=O)[C@@](CC2=CC=C(OC\C=C(/C)CO)C=C2)(SC)N(C)C1=O

InChI Identifier

InChI=1S/C20H28N2O4S2/c1-14(13-23)10-11-26-16-8-6-15(7-9-16)12-20(28-5)19(25)21(2)18(27-4)17(24)22(20)3/h6-10,18,23H,11-13H2,1-5H3/b14-10+/t18-,20-/m1/s1

InChI Key

LAPJSFKZTWJPRA-LQFRORHJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trichoderma virens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Alpha amino acids and derivatives

Alternative Parents

Substituents

Alpha-amino acid or derivatives
Thiodioxopiperazine
Dioxopiperazine
Phenol ether
Phenoxy compound
2,5-dioxopiperazine
Alkyl aryl ether
N-methylpiperazine
N-alkylpiperazine
Monocyclic benzene moiety
1,4-diazinane
Piperazine
Benzenoid
Tertiary carboxylic acid amide
Carboxamide group
Lactam
Sulfenyl compound
Hemithioaminal
Thioether
Dialkylthioether
Organoheterocyclic compound
Azacycle
Ether
Hydrocarbon derivative
Organonitrogen compound
Organooxygen compound
Organosulfur compound
Alcohol
Organopnictogen compound
Organic oxide
Carbonyl group
Organic oxygen compound
Primary alcohol
Organic nitrogen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.69	ChemAxon
pKa (Strongest Acidic)	15.1	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	70.08 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	116.28 m³·mol⁻¹	ChemAxon
Polarizability	44.55 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

13989143

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione (NP0212639)

MOL for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

3D MOL for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

3D SDF for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

3D-SDF for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

PDB for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

3D PDB for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

SMILES for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

INCHI for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

Structure for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)

3D Structure for NP0212639 ((3r,6r)-3-[(4-{[(2e)-4-hydroxy-3-methylbut-2-en-1-yl]oxy}phenyl)methyl]-1,4-dimethyl-3,6-bis(methylsulfanyl)piperazine-2,5-dione)