NP-MRD: Showing NP-Card for (1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate (NP0211936)

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Record Information

Version

2.0

Created at

2022-09-05 10:25:14 UTC

Updated at

2022-09-05 10:25:15 UTC

NP-MRD ID

NP0211936

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate

Description

(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-5-yl acetate belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group. (1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate is found in Veratrum album. Based on a literature review very few articles have been published on (1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecan-5-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052212252D          

 34 38  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652309052212252D          

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  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
  5 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 15 14  1  1  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  2  0  0  0  0
 22 28  1  0  0  0  0
 28 29  1  0  0  0  0
 19 30  1  0  0  0  0
 16 30  1  0  0  0  0
 30 31  1  6  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 34 33  1  6  0  0  0
 15 34  1  0  0  0  0
  8 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0211936

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]([C@H]1CC[C@H]2[C@@H]3CC(=O)[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)OC(C)=O)C1=NC=C(C)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C29H41NO4/c1-16-12-26(33)27(30-15-16)17(2)21-6-7-22-20-14-25(32)24-13-19(34-18(3)31)8-10-29(24,5)23(20)9-11-28(21,22)4/h12,15,17,19-24,33H,6-11,13-14H2,1-5H3/t17-,19+,20+,21-,22+,23+,24-,28-,29-/m1/s1

> <INCHI_KEY>
GANKTJHOGMIBAJ-ZWPCPUIGSA-N

> <FORMULA>
C29H41NO4

> <MOLECULAR_WEIGHT>
467.65

> <EXACT_MASS>
467.303558804

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
54.204450289263676

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl acetate

> <JCHEM_LOGP>
5.226920379666664

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.857899588082711

> <JCHEM_PKA_STRONGEST_BASIC>
6.127086194976784

> <JCHEM_POLAR_SURFACE_AREA>
76.49000000000001

> <JCHEM_REFRACTIVITY>
131.19499999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.206  -1.904   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.310  -2.175   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       1.833  -3.624   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       2.303  -0.998   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.819  -1.269   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.342  -2.717   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.858  -2.988   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.851  -1.811   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.374  -3.259   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.327  -0.363   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.811  -0.092   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.320   0.815   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.797   2.263   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       8.836   0.544   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.359  -0.905   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.875  -1.176   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      12.091  -0.231   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      13.366  -1.095   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.938  -2.574   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.883  -3.790   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.408  -3.579   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      13.303  -5.217   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0      11.777  -5.427   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0      11.197  -6.854   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      12.142  -8.069   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.562  -9.496   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.667  -7.859   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.248  -6.432   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      15.773  -6.222   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      11.399  -2.624   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      12.070  -4.010   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      10.406  -3.802   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       8.890  -3.531   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.367  -2.082   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   34                                             
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10    5                                                       
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   34                                                  
CONECT   16   15   17   30                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   30                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   28                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   22   29                                                  
CONECT   29   28                                                            
CONECT   30   19   16   31   32                                             
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   15    8                                                  
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

View in JSmol

Synonyms

Value	Source
(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-Hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0,.0,]heptadecan-5-yl acetic acid	Generator

Chemical Formula

C₂₉H₄₁NO₄

Average Mass

467.6500 Da

Monoisotopic Mass

467.30356 Da

IUPAC Name

(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl acetate

Traditional Name

(1S,2R,5S,7S,10S,11S,14R,15S)-14-[(1R)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-2,15-dimethyl-8-oxotetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-5-yl acetate

CAS Registry Number

Not Available

SMILES

C[C@H]([C@H]1CC[C@H]2[C@@H]3CC(=O)[C@H]4C[C@H](CC[C@]4(C)[C@H]3CC[C@]12C)OC(C)=O)C1=NC=C(C)C=C1O

InChI Identifier

InChI=1S/C29H41NO4/c1-16-12-26(33)27(30-15-16)17(2)21-6-7-22-20-14-25(32)24-13-19(34-18(3)31)8-10-29(24,5)23(20)9-11-28(21,22)4/h12,15,17,19-24,33H,6-11,13-14H2,1-5H3/t17-,19+,20+,21-,22+,23+,24-,28-,29-/m1/s1

InChI Key

GANKTJHOGMIBAJ-ZWPCPUIGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Veratrum album	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid esters

Direct Parent

Steroid esters

Alternative Parents

Substituents

Steroid ester
Pregnane-skeleton
Oxosteroid
6-oxosteroid
Methylpyridine
Hydroxypyridine
Pyridine
Heteroaromatic compound
Carboxylic acid ester
Ketone
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Azacycle
Organoheterocyclic compound
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Carbonyl group
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.23	ChemAxon
pKa (Strongest Acidic)	9.86	ChemAxon
pKa (Strongest Basic)	6.13	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	76.49 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	131.2 m³·mol⁻¹	ChemAxon
Polarizability	54.2 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162879532

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate (NP0211936)

MOL for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

3D MOL for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

3D SDF for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

3D-SDF for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

PDB for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

3D PDB for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

SMILES for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

INCHI for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

Structure for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)

3D Structure for NP0211936 ((1r,3as,3bs,5as,7s,9ar,9bs,11as)-1-[(1r)-1-(3-hydroxy-5-methylpyridin-2-yl)ethyl]-9a,11a-dimethyl-5-oxo-tetradecahydrocyclopenta[a]phenanthren-7-yl acetate)