NP-MRD: Showing NP-Card for 1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one (NP0211864)

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Record Information

Version

1.0

Created at

2022-09-05 10:19:12 UTC

Updated at

2022-09-05 10:19:12 UTC

NP-MRD ID

NP0211864

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one

Description

1-[10-(Butan-2-yl)-8,11-dihydroxy-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]Nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. 1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one is found in Paliurus ramosissimus. 1-[10-(Butan-2-yl)-8,11-dihydroxy-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]Nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161504422D          

 35 37  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1533004161504422D          

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  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  5  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 20 19  1  4  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 27 29  1  0  0  0  0
 11 29  1  0  0  0  0
 14 29  1  0  0  0  0
 25 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 19 34  1  0  0  0  0
 34 35  2  0  0  0  0
 16 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0211864

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C(N(C)C)C(=O)N1CCC2OC3=CC=C(C=C3)C=CNC(=O)C(NC(=O)C12)C(C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C27H40N4O4/c1-7-17(3)22-25(32)28-15-13-19-9-11-20(12-10-19)35-21-14-16-31(24(21)26(33)29-22)27(34)23(30(5)6)18(4)8-2/h9-13,15,17-18,21-24H,7-8,14,16H2,1-6H3,(H,28,32)(H,29,33)

> <INCHI_KEY>
SUFYJRIKGVPYQN-UHFFFAOYSA-N

> <FORMULA>
C27H40N4O4

> <MOLECULAR_WEIGHT>
484.641

> <EXACT_MASS>
484.304955784

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
52.5326483981962

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
10-(butan-2-yl)-6-[2-(dimethylamino)-3-methylpentanoyl]-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),13,15,18-tetraene-8,11-dione

> <ALOGPS_LOGP>
2.95

> <JCHEM_LOGP>
2.8384273813333305

> <ALOGPS_LOGS>
-3.65

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
13.16114262980615

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.336891811762124

> <JCHEM_PKA_STRONGEST_BASIC>
8.090188590881281

> <JCHEM_POLAR_SURFACE_AREA>
90.97999999999999

> <JCHEM_REFRACTIVITY>
135.74309999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.09e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-[2-(dimethylamino)-3-methylpentanoyl]-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),13,15,18-tetraene-8,11-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      -0.286  -7.766   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.048  -6.996   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.382  -7.766   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.382  -9.306   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.715  -6.996   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       3.715  -5.456   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       5.049  -4.686   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.382  -4.686   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.049  -7.766   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       5.049  -9.306   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0       6.383  -6.996   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       6.544  -5.464   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.050  -5.144   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.820  -6.478   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      10.264  -5.833   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      11.851  -6.157   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.209  -7.575   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.026  -8.876   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      13.561  -8.916   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.549 -10.533   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      12.868 -11.985   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0      11.458 -12.775   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       9.838 -12.740   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       9.431 -14.225   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       8.447 -11.955   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0       7.569 -10.671   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0       7.328  -9.136   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.792  -9.029   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       7.789  -7.622   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.405 -13.089   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.902 -12.755   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       7.867 -14.559   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.826 -15.693   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      14.207  -7.487   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      13.428  -6.150   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    9                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    5   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   29                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   29                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   35                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   34                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   11   14                                                  
CONECT   30   25   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32                                                            
CONECT   34   19   35                                                       
CONECT   35   34   16                                                       
MASTER        0    0    0    0    0    0    0    0   35    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀N₄O₄

Average Mass

484.6410 Da

Monoisotopic Mass

484.30496 Da

IUPAC Name

10-(butan-2-yl)-6-[2-(dimethylamino)-3-methylpentanoyl]-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),13,15,18-tetraene-8,11-dione

Traditional Name

6-[2-(dimethylamino)-3-methylpentanoyl]-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),13,15,18-tetraene-8,11-dione

CAS Registry Number

Not Available

SMILES

CCC(C)C(N(C)C)C(=O)N1CCC2OC3=CC=C(C=C3)C=CNC(=O)C(NC(=O)C12)C(C)CC

InChI Identifier

InChI=1S/C27H40N4O4/c1-7-17(3)22-25(32)28-15-13-19-9-11-20(12-10-19)35-21-14-16-31(24(21)26(33)29-22)27(34)23(30(5)6)18(4)8-2/h9-13,15,17-18,21-24H,7-8,14,16H2,1-6H3,(H,28,32)(H,29,33)

InChI Key

SUFYJRIKGVPYQN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Paliurus ramosissimus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Oligopeptides

Alternative Parents

Substituents

Alpha-oligopeptide
Cyclic alpha peptide
Isoleucine or derivatives
Macrolactam
Alpha-amino acid or derivatives
N-acylpyrrolidine
Alkyl aryl ether
Benzenoid
Pyrrolidine
Tertiary carboxylic acid amide
Amino acid or derivatives
Carboxamide group
Lactam
Secondary carboxylic acid amide
Tertiary amine
Tertiary aliphatic amine
Ether
Oxacycle
Azacycle
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Amine
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.95	ALOGPS
logP	2.84	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	11.34	ChemAxon
pKa (Strongest Basic)	8.09	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	90.98 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	135.74 m³·mol⁻¹	ChemAxon
Polarizability	52.53 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one (NP0211864)

MOL for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

3D MOL for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

3D SDF for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

3D-SDF for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

PDB for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

3D PDB for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

SMILES for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

INCHI for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

Structure for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)

3D Structure for NP0211864 (1-[8,11-dihydroxy-10-(sec-butyl)-2-oxa-6,9,12-triazatricyclo[13.2.2.0³,⁷]nonadeca-1(17),8,11,13,15,18-hexaen-6-yl]-2-(dimethylamino)-3-methylpentan-1-one)