NP-MRD: Showing NP-Card for (2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol (NP0211363)

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Record Information

Version

2.0

Created at

2022-09-05 09:37:04 UTC

Updated at

2022-09-05 09:37:04 UTC

NP-MRD ID

NP0211363

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol

Description

SCHEMBL62485 belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety. (2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol is found in Gastrodia elata. Based on a literature review very few articles have been published on SCHEMBL62485.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309052211372D          

 27 30  0  0  1  0            999 V2000
    3.2789    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5249   -1.0396    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3319   -1.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5868   -1.9957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3938   -2.1672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6487   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0967   -3.5650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3516   -4.3496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2897   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0348   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7712   -0.7040    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2192   -1.3171    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6013   -1.2309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9368   -0.4772    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6317   -2.0316    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2961   -2.7852    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4387   -1.8600    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6102   -2.6670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  2  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  6 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 13 19  1  0  0  0  0
 11 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END

     RDKit          3D

 46 49  0  0  0  0  0  0  0  0999 V2000
   -5.6768   -1.9572    0.4372 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4100   -1.8052   -0.1641 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1748   -2.3479   -1.3900 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9738   -2.1899   -1.9328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0367   -1.5164   -1.2825 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2081   -0.9525   -0.0607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4581   -1.0993    0.5390 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3846   -0.4759    1.7078 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1406    0.0527    1.8602 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4364   -0.2438    0.7794 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0325    0.0888    0.4405 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.6668   -1.2057    0.3673 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0824   -1.2326    0.0430 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5070   -1.4642   -1.2435 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8499   -1.4832   -1.5931 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8081   -1.2669   -0.6412 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1629   -1.2852   -0.9893 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3932   -1.0339    0.6539 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0624   -1.0113    1.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4614    0.9790    1.3872 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2594    2.2708    0.9474 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4377    3.1840    1.8911 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5255    4.4371    1.2356 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4721    2.2214   -0.3717 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0183    3.1718   -1.2482 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0755    0.8226   -0.8587 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1638    0.8837   -1.4946 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5148   -1.5845   -0.0307 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7606   -2.4404    1.3425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7400   -2.6029   -2.9046 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7669    0.6157    2.7044 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5537   -1.8088    1.3243 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1347   -1.8757   -0.3809 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8251   -1.6570   -2.0592 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1782   -1.6670   -2.6148 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4273   -1.4555   -1.9285 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1721   -0.8647    1.3944 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7749   -0.8245    2.0487 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2651    2.7043    0.7404 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4616    2.9125    2.1589 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1223    3.3185    2.8391 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3561    4.8903    1.2360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5643    2.2917   -0.2802 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8891    2.9738   -1.5985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8345    0.4880   -1.5731 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9877    1.0454   -2.4559 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10  6  1  0
  6  5  2  0
  5  4  1  0
  4  3  2  0
 10 11  1  0
 11 12  1  6
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
 11 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 21 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
  3  2  1  0
 26 11  1  0
  6  7  1  0
 19 13  1  0
  1 28  1  0
  1 29  1  0
  9 31  1  0
  4 30  1  0
 12 32  1  0
 12 33  1  0
 14 34  1  0
 15 35  1  0
 17 36  1  0
 18 37  1  0
 19 38  1  0
 21 39  1  6
 22 40  1  0
 22 41  1  0
 23 42  1  0
 24 43  1  1
 25 44  1  0
 26 45  1  6
 27 46  1  0
M  END


  Mrv1652309052211372D          

 27 30  0  0  1  0            999 V2000
    3.2789    2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.9934    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2789   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5645    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798    1.0799    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2949    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7798   -0.2549    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5249   -1.0396    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3319   -1.2111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5868   -1.9957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3938   -2.1672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6487   -2.9519    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0967   -3.5650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3516   -4.3496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2897   -3.3934    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0348   -2.6088    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7712   -0.7040    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2192   -1.3171    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6013   -1.2309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9368   -0.4772    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6317   -2.0316    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2961   -2.7852    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4387   -1.8600    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6102   -2.6670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  2  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
  6 10  1  0  0  0  0
 11 10  1  1  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 13 19  1  0  0  0  0
 11 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 11 26  1  0  0  0  0
 26 27  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0211363

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC1=C2N=CN(C2=NC=N1)[C@]1(CC2=CC=C(O)C=C2)O[C@H](CO)[C@@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C17H19N5O5/c18-15-12-16(20-7-19-15)22(8-21-12)17(5-9-1-3-10(24)4-2-9)14(26)13(25)11(6-23)27-17/h1-4,7-8,11,13-14,23-26H,5-6H2,(H2,18,19,20)/t11-,13-,14-,17-/m1/s1

> <INCHI_KEY>
JRNIZQJLUVHIPX-LSCFUAHRSA-N

> <FORMULA>
C17H19N5O5

> <MOLECULAR_WEIGHT>
373.369

> <EXACT_MASS>
373.138618732

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
36.03378537813647

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol

> <JCHEM_LOGP>
-0.3757893670000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.343076627079622

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.084009742969481

> <JCHEM_PKA_STRONGEST_BASIC>
3.898273066235527

> <JCHEM_POLAR_SURFACE_AREA>
159.77

> <JCHEM_REFRACTIVITY>
94.76210000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 05-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   05-SEP-22         0                                  
HETATM    1  N   UNK     0       6.121   3.850   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       6.121   2.310   0.000  0.00  0.00           C+0
HETATM    3  N   UNK     0       7.454   1.540   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0       7.454   0.000   0.000  0.00  0.00           C+0
HETATM    5  N   UNK     0       6.121  -0.770   0.000  0.00  0.00           N+0
HETATM    6  C   UNK     0       4.787   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.787   1.540   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       3.322   2.016   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       2.417   0.770   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       3.322  -0.476   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       2.846  -1.941   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.353  -2.261   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.829  -3.725   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.335  -4.046   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.811  -5.510   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.780  -6.655   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.256  -8.119   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.274  -6.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.798  -4.870   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       1.440  -1.314   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       0.409  -2.459   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.122  -2.298   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -1.749  -0.891   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       1.179  -3.792   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       0.553  -5.199   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.685  -3.472   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       3.006  -4.978   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   10                                                  
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    6   11                                                  
CONECT   11   10   12   20   26                                             
CONECT   12   11   13                                                       
CONECT   13   12   14   19                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   13                                                       
CONECT   20   11   21                                                       
CONECT   21   20   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   11   27                                                  
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₇H₁₉N₅O₅

Average Mass

373.3690 Da

Monoisotopic Mass

373.13862 Da

IUPAC Name

(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol

Traditional Name

(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol

CAS Registry Number

Not Available

SMILES

NC1=C2N=CN(C2=NC=N1)[C@]1(CC2=CC=C(O)C=C2)O[C@H](CO)[C@@H](O)[C@H]1O

InChI Identifier

InChI=1S/C17H19N5O5/c18-15-12-16(20-7-19-15)22(8-21-12)17(5-9-1-3-10(24)4-2-9)14(26)13(25)11(6-23)27-17/h1-4,7-8,11,13-14,23-26H,5-6H2,(H2,18,19,20)/t11-,13-,14-,17-/m1/s1

InChI Key

JRNIZQJLUVHIPX-LSCFUAHRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gastrodia elata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as purine nucleosides. Purine nucleosides are compounds comprising a purine base attached to a ribosyl or deoxyribosyl moiety.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Purine nucleosides

Sub Class

Not Available

Direct Parent

Purine nucleosides

Alternative Parents

Substituents

Purine nucleoside
C-glycosyl compound
Glycosyl compound
6-aminopurine
Pentose monosaccharide
Imidazopyrimidine
Purine
Aminopyrimidine
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Monosaccharide
N-substituted imidazole
Imidolactam
Benzenoid
Pyrimidine
Oxolane
Azole
Heteroaromatic compound
Imidazole
Secondary alcohol
1,2-diol
Oxacycle
Azacycle
Organoheterocyclic compound
Amine
Alcohol
Organic nitrogen compound
Hydrocarbon derivative
Organonitrogen compound
Primary alcohol
Primary amine
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.38	ChemAxon
pKa (Strongest Acidic)	10.08	ChemAxon
pKa (Strongest Basic)	3.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	159.77 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	94.76 m³·mol⁻¹	ChemAxon
Polarizability	36.03 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

66589628

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol (NP0211363)

MOL for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

3D MOL for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

3D SDF for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

3D-SDF for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

PDB for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

3D PDB for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

SMILES for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

INCHI for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

Structure for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)

3D Structure for NP0211363 ((2r,3r,4s,5r)-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-2-[(4-hydroxyphenyl)methyl]oxolane-3,4-diol)