NP-MRD: Showing NP-Card for 3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid (NP0211325)

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Record Information

Version

2.0

Created at

2022-09-05 09:34:07 UTC

Updated at

2022-09-05 09:34:08 UTC

NP-MRD ID

NP0211325

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid

Description

3,4,5-Trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylic acid belongs to the class of organic compounds known as steroid glucuronide conjugates. These are sterol lipids containing a glucuronide moiety linked to the steroid skeleton. 3,4,5-Trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004191515242D          

 57 63  0  0  0  0            999 V2000
    6.1111   -0.6800    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2939   -0.7929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9830   -1.5571    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7875   -0.1416    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0168    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3340    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6826    0.6076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8705    0.7528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3387    0.1221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6190   -0.6539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4311   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9629   -0.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3228   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5266    0.2673    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8069   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9948   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1827   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0976    0.5577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9098    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1901    1.4789    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6582    2.1096    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9385    2.8855    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7507    3.0307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0310    3.8066    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2825    2.4000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0946    2.5452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3749    3.3211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8431    3.9518    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1234    4.7278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9355    4.8730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2158    5.6489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4673    4.2423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2794    4.3875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1870    3.4663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7188    2.8356    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5916    5.3585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8719    6.1344    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7794    5.2133    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0022    1.6241    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5340    0.9934    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2537    0.2174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4416    0.0722    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1613   -0.7037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3492   -0.8489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0689   -1.6248    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6931   -1.3344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4128   -2.1103    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5052   -1.1892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0370   -1.8199    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7855   -0.4133    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5976   -0.2681    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4342    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2793    1.6026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7182    1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2463    1.0432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7781    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5902    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
  7 12  1  0  0  0  0
 12 13  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  1  0  0  0  0
 27 34  1  0  0  0  0
 34 35  1  0  0  0  0
 29 36  1  0  0  0  0
 36 37  2  0  0  0  0
 36 38  1  0  0  0  0
 25 39  1  0  0  0  0
 20 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 43 46  1  0  0  0  0
 46 47  1  0  0  0  0
 46 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 41 50  1  0  0  0  0
 50 51  1  0  0  0  0
 18 52  1  0  0  0  0
 52 53  1  0  0  0  0
 52 54  1  0  0  0  0
 52 55  1  0  0  0  0
 14 55  1  0  0  0  0
 55 56  1  0  0  0  0
 56 57  1  0  0  0  0
  8 57  1  0  0  0  0
M  END

     RDKit          3D

119125  0  0  0  0  0  0  0  0999 V2000
   11.0473    0.1939   -0.5435 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7548   -0.5249   -0.9541 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8307   -1.9193   -0.4270 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5617    0.2209   -0.4863 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6296    1.3392    0.2128 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2743    1.7950    0.5028 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3901    0.9985    0.0075 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9435    0.8713   -0.0626 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4118   -0.3040   -0.3300 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2145   -1.5442   -0.2792 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6836   -1.3530   -0.0884 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1657   -0.0894   -0.7068 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8673   -0.0084   -2.1898 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9686   -0.3027   -0.6838 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.5019   -1.7089   -0.8064 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7833    0.3619   -2.0344 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3856    0.7396   -2.3409 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3530    0.2887   -1.3404 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8307    0.9925   -1.6672 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8620    0.1666   -2.0474 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2642    0.3203   -3.3569 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5322   -0.0007   -3.6598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2802   -0.9291   -2.7994 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6231   -0.5379   -2.7184 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.7305   -1.2844   -0.4406 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5430   -2.4398    0.3095 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6179   -3.2880    0.0409 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5584   -3.2586    1.0769 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.8283   -3.8295    0.6267 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.8300   -4.2281    3.2644 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6865   -3.3325    2.6364 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5831   -4.1898    2.6105 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4214   -2.1097    1.7620 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.0987   -1.7287    2.0372 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0107    0.1927   -1.0709 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.7895    1.2769   -1.0729 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9827    2.0414    0.0155 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.3509    2.0323    0.3323 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6665    2.7689    1.4410 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.7743    1.8324    2.6254 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7386    0.8680    2.4709 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6290    3.8137    1.8051 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.2688    4.7695    2.5922 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.1773    5.1031   -0.1433 O   0  0  0  0  0  0  0  0  0  0  0  0
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   11.8735   -0.4595   -0.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0377    0.2862    0.5456 H   0  0  0  0  0  0  0  0  0  0  0  0
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    9.4499   -2.6025   -1.2155 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3625   -2.0380    0.5509 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.9198   -2.2004   -0.3250 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.5468    1.8153    0.5073 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0553    2.6958    1.0667 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.8877   -2.2072    0.5783 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2021   -2.2712   -0.4605 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8699   -1.2534    1.0192 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6403   -0.5599   -2.7233 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9138    1.0631   -2.4627 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8616   -0.3883   -2.4263 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6641   -1.9758   -0.1256 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2695   -2.4826   -0.5960 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.1234    0.9580   -3.7701 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -6.7411   -2.2262    1.4389 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0475   -3.3486    2.2953 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6307   -5.0661    1.7983 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2573   -5.1143    3.1499 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1533004191515242D          

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M  END
> <DATABASE_ID>
NP0211325

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1=CC=C2C3=C(CCC12C)C1(C)CCC(OC2OCC(O)C(OC4OC(C(O)C(O)C4O)C(O)=O)C2OC2OC(CO)C(O)C(O)C2O)C(C)(C)C1CC3

> <INCHI_IDENTIFIER>
InChI=1S/C41H62O16/c1-17(2)19-8-9-20-18-7-10-24-39(3,4)25(12-14-41(24,6)21(18)11-13-40(19,20)5)54-38-34(57-36-30(48)27(45)26(44)23(15-42)53-36)32(22(43)16-52-38)55-37-31(49)28(46)29(47)33(56-37)35(50)51/h8-9,17,22-34,36-38,42-49H,7,10-16H2,1-6H3,(H,50,51)

> <INCHI_KEY>
KSOAPUHGMCMIDE-UHFFFAOYSA-N

> <FORMULA>
C41H62O16

> <MOLECULAR_WEIGHT>
810.931

> <EXACT_MASS>
810.403785916

> <JCHEM_ACCEPTOR_COUNT>
16

> <JCHEM_ATOM_COUNT>
119

> <JCHEM_AVERAGE_POLARIZABILITY>
84.26396305337681

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,4,5-trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylic acid

> <ALOGPS_LOGP>
2.46

> <JCHEM_LOGP>
0.5738547063333337

> <ALOGPS_LOGS>
-3.22

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.91859180911342

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.0942565884510285

> <JCHEM_PKA_STRONGEST_BASIC>
-3.648377595760328

> <JCHEM_POLAR_SURFACE_AREA>
254.51999999999995

> <JCHEM_REFRACTIVITY>
199.1118000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.91e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,4,5-trihydroxy-6-{[5-hydroxy-2-({14-isopropyl-2,6,6,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(10),11,13-trien-5-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0      11.407  -1.269   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.882  -1.480   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.302  -2.907   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.937  -0.264   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.365   1.215   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.090   2.079   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.874   1.134   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.358   1.405   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.366   0.228   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.889  -1.221   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.405  -1.492   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.398  -0.314   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.069  -1.700   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.850   0.499   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.373  -0.949   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.857  -0.678   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.341  -0.407   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.182   1.041   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.698   1.312   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -2.221   2.761   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -1.229   3.938   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -1.752   5.386   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -3.268   5.657   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -3.791   7.106   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -4.261   4.480   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -5.777   4.751   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      -6.300   6.199   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      -5.307   7.377   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      -5.830   8.825   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -7.346   9.096   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -7.869  10.545   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -8.339   7.919   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      -9.855   8.190   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      -7.816   6.471   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -8.809   5.293   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      -4.838  10.002   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      -5.361  11.451   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      -3.322   9.731   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      -3.737   3.032   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      -4.730   1.854   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      -4.207   0.406   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -2.691   0.135   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -2.168  -1.314   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -0.652  -1.585   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      -0.129  -3.033   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      -3.160  -2.491   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -2.637  -3.939   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -4.676  -2.220   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      -5.669  -3.397   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      -5.200  -0.771   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -6.716  -0.500   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0       0.810   2.218   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -0.521   2.992   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       1.341   3.664   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0       2.326   1.947   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       3.319   3.125   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0       4.835   2.854   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   12                                                  
CONECT    8    7    9   57                                                  
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    4    7   13                                             
CONECT   13   12                                                            
CONECT   14    9   15   16   55                                             
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   52                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   39                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   39                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   34                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30   36                                                  
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   27   35                                                  
CONECT   35   34                                                            
CONECT   36   29   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
CONECT   39   25   20   40                                                  
CONECT   40   39   41                                                       
CONECT   41   40   42   50                                                  
CONECT   42   41   43                                                       
CONECT   43   42   44   46                                                  
CONECT   44   43   45                                                       
CONECT   45   44                                                            
CONECT   46   43   47   48                                                  
CONECT   47   46                                                            
CONECT   48   46   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   41   51                                                  
CONECT   51   50                                                            
CONECT   52   18   53   54   55                                             
CONECT   53   52                                                            
CONECT   54   52                                                            
CONECT   55   52   14   56                                                  
CONECT   56   55   57                                                       
CONECT   57   56    8                                                       
MASTER        0    0    0    0    0    0    0    0   57    0  126    0
END

View in JSmol

Synonyms

Value	Source
3,4,5-Trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0,.0,]heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylate	Generator
3,4,5-Trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylate	Generator

Chemical Formula

C₄₁H₆₂O₁₆

Average Mass

810.9310 Da

Monoisotopic Mass

810.40379 Da

IUPAC Name

3,4,5-trihydroxy-6-[(5-hydroxy-2-{[2,6,6,15-tetramethyl-14-(propan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(10),11,13-trien-5-yl]oxy}-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl)oxy]oxane-2-carboxylic acid

Traditional Name

3,4,5-trihydroxy-6-{[5-hydroxy-2-({14-isopropyl-2,6,6,15-tetramethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadeca-1(10),11,13-trien-5-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC(C)C1=CC=C2C3=C(CCC12C)C1(C)CCC(OC2OCC(O)C(OC4OC(C(O)C(O)C4O)C(O)=O)C2OC2OC(CO)C(O)C(O)C2O)C(C)(C)C1CC3

InChI Identifier

InChI=1S/C41H62O16/c1-17(2)19-8-9-20-18-7-10-24-39(3,4)25(12-14-41(24,6)21(18)11-13-40(19,20)5)54-38-34(57-36-30(48)27(45)26(44)23(15-42)53-36)32(22(43)16-52-38)55-37-31(49)28(46)29(47)33(56-37)35(50)51/h8-9,17,22-34,36-38,42-49H,7,10-16H2,1-6H3,(H,50,51)

InChI Key

KSOAPUHGMCMIDE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid glucuronide conjugates. These are sterol lipids containing a glucuronide moiety linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroid glucuronide conjugates

Alternative Parents

Substituents

Steroid-glucuronide-skeleton
1-o-glucuronide
O-glucuronide
Glucuronic acid or derivatives
Disaccharide
Glycosyl compound
O-glycosyl compound
Beta-hydroxy acid
Hydroxy acid
Pyran
Oxane
Secondary alcohol
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Acetal
Oxacycle
Carboxylic acid
Carboxylic acid derivative
Polyol
Organooxygen compound
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.46	ALOGPS
logP	0.57	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	3.09	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	16	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	254.52 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	199.11 m³·mol⁻¹	ChemAxon
Polarizability	84.26 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73047130

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid (NP0211325)

MOL for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

3D MOL for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

3D SDF for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

3D-SDF for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

PDB for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

3D PDB for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

SMILES for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

INCHI for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

Structure for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)

3D Structure for NP0211325 (3,4,5-trihydroxy-6-{[5-hydroxy-2-({1-isopropyl-6,6,9a,11a-tetramethyl-4h,5h,5ah,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl}oxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-4-yl]oxy}oxane-2-carboxylic acid)